Indenting cleanup for all *.[ch] files, except htsparse.c (too ugly to be automatically indented for now) and /minizip/, /mmsrip/ (external files)

setup:
  indent -l80 -lc80 -nhnl -nut -bad -bap -bbo -br -brf -bli2 -brs -bls -br -ss -sai -pmt -nsaw -nsaf -nprs -i2 -ce -npsl -npcs -cs -sob -cdw -nbc -lp

logs:
indent: ./src/htsback.c:157: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsback.c:1417: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsback.c:1826: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsback.c:1833: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsback.c:1981: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsback.c:2685: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsback.c:2747: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsback.c:2861: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsback.c:3128: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsback.c:3512: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htswizard.c:140: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htswizard.c:597: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htswizard.c:598: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htswizard.c:611: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htscoremain.c:97: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htscoremain.c:106: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htscoremain.c:106: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htscoremain.c:256: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htscoremain.c:262: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htscoremain.c:935: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/httrack.c:271: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/httrack.c:272: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/httrack.c:273: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/httrack.c:274: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/httrack.c:275: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/httrack.c:276: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/httrack.c:277: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/httrack.c:278: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/httrack.c:279: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/httrack.c:280: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/httrack.c:281: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/httrack.c:662: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/httrack.c:752: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsweb.c:413: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsweb.c:414: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsweb.c:415: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsweb.c:416: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsweb.c:417: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsweb.c:418: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsweb.c:419: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsweb.c:420: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsweb.c:421: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsweb.c:422: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsweb.c:423: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/proxy/proxytrack.c:188: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/proxy/proxytrack.c:507: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/proxy/proxytrack.c:508: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/proxy/proxytrack.c:509: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/proxy/proxytrack.c:510: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/proxy/proxytrack.c:511: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/proxy/proxytrack.c:512: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/proxy/proxytrack.c:580: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/proxy/proxytrack.c:581: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/proxy/proxytrack.h:115: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/proxy/proxytrack.h:246: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/proxy/proxytrack.h:247: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/proxy/proxytrack.h:248: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/proxy/proxytrack.h:249: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/proxy/proxytrack.h:250: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/proxy/proxytrack.h:251: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/proxy/proxytrack.h:314: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/proxy/proxytrack.h:315: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htstools.c:151: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htstools.c:158: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htstools.c:161: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htstools.c:166: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htstools.c:174: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htstools.c:177: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htstools.c:188: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htstools.c:243: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htstools.c:245: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htstools.c:248: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htstools.c:257: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htstools.c:647: Warning:old style assignment ambiguity in "=*".  Assuming "= *"
indent: ./src/htsbauth.c:364: Warning:old style assignment ambiguity in "=&".  Assuming "= &"
indent: ./src/htsbauth.c:387: Warning:old style assignment ambiguity in "=&".  Assuming "= &"
indent: ./src/htscache.c:473: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsserver.h:112: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsserver.h:187: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsjava.c:312: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsjava.c:379: Warning:old style assignment ambiguity in "=&".  Assuming "= &"
indent: ./src/htsjava.c:407: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsjava.c:472: Warning:old style assignment ambiguity in "=&".  Assuming "= &"
indent: ./src/htsjava.c:483: Warning:old style assignment ambiguity in "=*".  Assuming "= *"
indent: ./src/htslib.c:593: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:809: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:1743: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:1874: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:1896: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:1984: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:2085: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:2604: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:2605: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:2606: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:2607: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:2608: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:2609: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:2672: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:2673: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:2906: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:2928: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:2996: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:4802: Warning:old style assignment ambiguity in "=&".  Assuming "= &"
indent: ./src/htslib.c:5353: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:5354: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:5355: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:5357: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:5429: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htslib.c:5435: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htscore.c:208: Warning:old style assignment ambiguity in "=&".  Assuming "= &"
indent: ./src/htscore.c:277: Warning:old style assignment ambiguity in "=&".  Assuming "= &"
indent: ./src/htscore.c:279: Warning:old style assignment ambiguity in "=&".  Assuming "= &"
indent: ./src/htscore.c:357: Warning:old style assignment ambiguity in "=*".  Assuming "= *"
indent: ./src/htscore.c:394: Warning:old style assignment ambiguity in "=*".  Assuming "= *"
indent: ./src/htscore.c:1544: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htscore.c:3330: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htscore.c:3361: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htshash.c:140: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htshash.c:217: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsname.c:733: Warning:old style assignment ambiguity in "=*".  Assuming "= *"
indent: ./src/htsname.c:749: Warning:old style assignment ambiguity in "=*".  Assuming "= *"
indent: ./src/htsname.c:933: Warning:old style assignment ambiguity in "=*".  Assuming "= *"
indent: ./src/htsname.c:1520: Warning:old style assignment ambiguity in "=*".  Assuming "= *"
indent: ./src/htszlib.c:76: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htszlib.c:81: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htscatchurl.c:268: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsinthash.c:156: Warning:old style assignment ambiguity in "=&".  Assuming "= &"
indent: ./src/htsinthash.c:159: Warning:old style assignment ambiguity in "=&".  Assuming "= &"
indent: ./src/htsinthash.c:176: Warning:old style assignment ambiguity in "=&".  Assuming "= &"
indent: ./src/htsinthash.c:179: Warning:old style assignment ambiguity in "=&".  Assuming "= &"
indent: ./src/htsinthash.c:226: Warning:old style assignment ambiguity in "=&".  Assuming "= &"
indent: ./src/htsinthash.c:253: Warning:old style assignment ambiguity in "=&".  Assuming "= &"
indent: ./src/htsftp.c:169: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsftp.c:177: Warning:old style assignment ambiguity in "=-".  Assuming "= -"
indent: ./src/htsfilters.c:67: Warning:old style assignment ambiguity in "=*".  Assuming "= *"
indent: ./src/htsfilters.c:80: Warning:old style assignment ambiguity in "=*".  Assuming "= *"

1 files changed, 26 insertions, 24 deletions

diff --git a/libtest/callbacks-example-log.c b/libtest/callbacks-example-log.c
index 21881b7..d7d1465 100755
--- a/libtest/callbacks-example-log.c
+++ b/libtest/callbacks-example-log.c
@@ -24,23 +24,24 @@
 #include "htsdefines.h"
 
 /* external functions */
-EXTERNAL_FUNCTION int hts_plug(httrackp *opt, const char* argv);
-EXTERNAL_FUNCTION int hts_unplug(httrackp *opt);
+EXTERNAL_FUNCTION int hts_plug(httrackp * opt, const char *argv);
+EXTERNAL_FUNCTION int hts_unplug(httrackp * opt);
 
 /* local function called as "check_html" callback */
-static int process_file(t_hts_callbackarg *carg, httrackp *opt, 
-                        char* html, int len, const char* url_address, const char* url_file) {
-  void *ourDummyArg = (void*) CALLBACKARG_USERDEF(carg);    /*optional user-defined arg*/
+static int process_file(t_hts_callbackarg * carg, httrackp * opt, char *html,
+                        int len, const char *url_address,
+                        const char *url_file) {
+  void *ourDummyArg = (void *) CALLBACKARG_USERDEF(carg);       /*optional user-defined arg */
   char *fmt;
 
   (void) ourDummyArg;
 
   /* call parent functions if multiple callbacks are chained. you can skip this part, if you don't want previous callbacks to be called. */
   if (CALLBACKARG_PREV_FUN(carg, check_html) != NULL) {
-    if (!CALLBACKARG_PREV_FUN(carg, check_html)(CALLBACKARG_PREV_CARG(carg), opt,
-                                                html, len, url_address, url_file)) {
-        return 0;  /* abort */
-      }
+    if (!CALLBACKARG_PREV_FUN(carg, check_html)
+        (CALLBACKARG_PREV_CARG(carg), opt, html, len, url_address, url_file)) {
+      return 0;                 /* abort */
+    }
   }
 
   /* log */
@@ -50,11 +51,11 @@ static int process_file(t_hts_callbackarg *carg, httrackp *opt,
   hts_log(opt, "log-wrapper-info", fmt);
   free(fmt);
 
-  return 1;  /* success */
+  return 1;                     /* success */
 }
 
-static int start_of_mirror(t_hts_callbackarg *carg, httrackp *opt) {
-  const char *arginfo = (char*) CALLBACKARG_USERDEF(carg);
+static int start_of_mirror(t_hts_callbackarg * carg, httrackp * opt) {
+  const char *arginfo = (char *) CALLBACKARG_USERDEF(carg);
 
   fprintf(stderr, "* mirror start\n");
   hts_log(opt, arginfo, "mirror started");
@@ -62,15 +63,15 @@ static int start_of_mirror(t_hts_callbackarg *carg, httrackp *opt) {
   /* call parent functions if multiple callbacks are chained. you can skip this part, if you don't want previous callbacks to be called. */
   if (CALLBACKARG_PREV_FUN(carg, end) != NULL) {
     /* status is ok on our side, return other callabck's status */
-    return CALLBACKARG_PREV_FUN(carg, start)(CALLBACKARG_PREV_CARG(carg), opt);
+    return CALLBACKARG_PREV_FUN(carg, start) (CALLBACKARG_PREV_CARG(carg), opt);
   }
 
-  return 1;  /* success */
+  return 1;                     /* success */
 }
 
 /* local function called as "end" callback */
-static int end_of_mirror(t_hts_callbackarg *carg, httrackp *opt) {
-  const char *arginfo = (char*) CALLBACKARG_USERDEF(carg);
+static int end_of_mirror(t_hts_callbackarg * carg, httrackp * opt) {
+  const char *arginfo = (char *) CALLBACKARG_USERDEF(carg);
 
   fprintf(stderr, "* mirror end\n");
   hts_log(opt, arginfo, "mirror ended");
@@ -78,19 +79,20 @@ static int end_of_mirror(t_hts_callbackarg *carg, httrackp *opt) {
   /* call parent functions if multiple callbacks are chained. you can skip this part, if you don't want previous callbacks to be called. */
   if (CALLBACKARG_PREV_FUN(carg, end) != NULL) {
     /* status is ok on our side, return other callabck's status */
-    return CALLBACKARG_PREV_FUN(carg, end)(CALLBACKARG_PREV_CARG(carg), opt);
+    return CALLBACKARG_PREV_FUN(carg, end) (CALLBACKARG_PREV_CARG(carg), opt);
   }
 
-  return 1;  /* success */
+  return 1;                     /* success */
 }
 
 /*
 module entry point
 the function name and prototype MUST match this prototype
 */
-EXTERNAL_FUNCTION int hts_plug(httrackp *opt, const char* argv) {
+EXTERNAL_FUNCTION int hts_plug(httrackp * opt, const char *argv) {
   /* optional argument passed in the commandline we won't be using here */
   const char *arg = strchr(argv, ',');
+
   if (arg != NULL)
     arg++;
 
@@ -98,19 +100,19 @@ EXTERNAL_FUNCTION int hts_plug(httrackp *opt, const char* argv) {
   if (arg == NULL)
     arg = "log-wrapper-info";
   hts_log(opt, arg, "* plugging functions");
-  CHAIN_FUNCTION(opt, check_html, process_file, (char*) arg);
-  CHAIN_FUNCTION(opt, start, start_of_mirror, (char*) arg);
-  CHAIN_FUNCTION(opt, end, end_of_mirror, (char*) arg);
+  CHAIN_FUNCTION(opt, check_html, process_file, (char *) arg);
+  CHAIN_FUNCTION(opt, start, start_of_mirror, (char *) arg);
+  CHAIN_FUNCTION(opt, end, end_of_mirror, (char *) arg);
 
   hts_log(opt, arg, "* module successfully plugged");
-  return 1;  /* success */
+  return 1;                     /* success */
 }
 
 /*
 module exit point
 the function name and prototype MUST match this prototype
 */
-EXTERNAL_FUNCTION int hts_unplug(httrackp *opt) {
+EXTERNAL_FUNCTION int hts_unplug(httrackp * opt) {
   hts_log(opt, "log-wrapper-info", "* module successfully unplugged");
   return 1;
 }