fix(upgrade): do not error if config in cwd invalid (#24689)

```
> deno upgrade
error: Unsupported lockfile version 'invalid'. Try upgrading Deno or recreating the lockfile.
V:\scratch
> V:\deno\target\debug\deno upgrade
Looking up latest version
Local deno version 1.45.3 is the most recent release
```

Closes #24517
Closes #20729

1 files changed, 8 insertions, 4 deletions

diff --git a/cli/tools/doc.rs b/cli/tools/doc.rs
index 138e0a47d..824a3fc38 100644
--- a/cli/tools/doc.rs
+++ b/cli/tools/doc.rs
@@ -29,6 +29,7 @@ use doc::DocDiagnostic;
 use indexmap::IndexMap;
 use std::collections::BTreeMap;
 use std::rc::Rc;
+use std::sync::Arc;
 
 async fn generate_doc_nodes_for_builtin_types(
   doc_flags: DocFlags,
@@ -83,9 +84,12 @@ async fn generate_doc_nodes_for_builtin_types(
   Ok(IndexMap::from([(source_file_specifier, nodes)]))
 }
 
-pub async fn doc(flags: Flags, doc_flags: DocFlags) -> Result<(), AnyError> {
-  let factory = CliFactory::from_flags(flags)?;
-  let cli_options = factory.cli_options();
+pub async fn doc(
+  flags: Arc<Flags>,
+  doc_flags: DocFlags,
+) -> Result<(), AnyError> {
+  let factory = CliFactory::from_flags(flags);
+  let cli_options = factory.cli_options()?;
   let module_info_cache = factory.module_info_cache()?;
   let parsed_source_cache = factory.parsed_source_cache();
   let capturing_parser = parsed_source_cache.as_capturing_parser();
@@ -102,7 +106,7 @@ pub async fn doc(flags: Flags, doc_flags: DocFlags) -> Result<(), AnyError> {
     }
     DocSourceFileFlag::Paths(ref source_files) => {
       let module_graph_creator = factory.module_graph_creator().await?;
-      let maybe_lockfile = factory.maybe_lockfile();
+      let maybe_lockfile = cli_options.maybe_lockfile();
 
       let module_specifiers = collect_specifiers(
         FilePatterns {