fix(cli): respect `exclude` option for `deno check` command (#21779)

This PR fixes #21658.

- `check` subcommand sees `exclude` option in `deno.json`. When some
paths passed with `check` command listed in `exclude`, they are ignored.
- When some files are listed in `exclude` and imported indirectly among
module graph, they are checked.

1 files changed, 1 insertions, 0 deletions

diff --git a/cli/tests/testdata/check/exclude_option/ignored/index.ts b/cli/tests/testdata/check/exclude_option/ignored/index.ts
new file mode 100644
index 000000000..0419cf073
--- /dev/null
+++ b/cli/tests/testdata/check/exclude_option/ignored/index.ts
@@ -0,0 +1 @@
+export { nothing };