feat: lockfile v4 by default (#25165)

This won't be fully stabilized until 2.0 is released.

34 files changed, 439 insertions, 553 deletions

diff --git a/Cargo.lock b/Cargo.lock
index 055c32320..4226e7eb0 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -1734,9 +1734,9 @@ dependencies = [
 
 [[package]]
 name = "deno_lockfile"
-version = "0.21.2"
+version = "0.22.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "04beb67705d894d688e818870a701829223f6f485ef3ce0b8b2a7adac98d9583"
+checksum = "92d4e132d2930cf5fbbec8323f4ac98952ca3d1c4ff74d770bbdd7c2588b1783"
 dependencies = [
  "serde",
  "serde_json",
@@ -1882,9 +1882,9 @@ dependencies = [
 
 [[package]]
 name = "deno_npm"
-version = "0.23.1"
+version = "0.24.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "96d72068f4292455d48ac3b90c644ebf3150fb78c26a480cfb235a9642afe95c"
+checksum = "cafaa830cea11b37ad838ed9508c9cc00ac0235fdd42b3b31aa74d5cd6fe3d92"
 dependencies = [
  "anyhow",
  "async-trait",
@@ -2814,9 +2814,9 @@ dependencies = [
 
 [[package]]
 name = "eszip"
-version = "0.75.0"
+version = "0.76.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "67ab3253e0e6a99b79ffc6d7a6243ad541f54543768cecd2198b64476a5971f8"
+checksum = "7b3a54eb4f58493897fc2627e76e6714c9b52c84213c923ab1601a5daf722b00"
 dependencies = [
  "anyhow",
  "async-trait",
diff --git a/Cargo.toml b/Cargo.toml
index 6e250bc92..3176d4e27 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -48,7 +48,7 @@ deno_ast = { version = "=0.41.2", features = ["transpiling"] }
 deno_core = { version = "0.306.0" }
 
 deno_bench_util = { version = "0.160.0", path = "./bench_util" }
-deno_lockfile = "0.21.2"
+deno_lockfile = "=0.22.0"
 deno_media_type = { version = "0.1.4", features = ["module_specifier"] }
 deno_permissions = { version = "0.26.0", path = "./runtime/permissions" }
 deno_runtime = { version = "0.175.0", path = "./runtime" }
diff --git a/cli/Cargo.toml b/cli/Cargo.toml
index 8eeef8cb3..33a169458 100644
--- a/cli/Cargo.toml
+++ b/cli/Cargo.toml
@@ -72,13 +72,13 @@ deno_emit = "=0.44.0"
 deno_graph = { version = "=0.81.3" }
 deno_lint = { version = "=0.63.1", features = ["docs"] }
 deno_lockfile.workspace = true
-deno_npm = "=0.23.1"
+deno_npm = "=0.24.0"
 deno_package_json.workspace = true
 deno_runtime = { workspace = true, features = ["include_js_files_for_snapshotting"] }
 deno_semver = "=0.5.10"
 deno_task_shell = "=0.17.0"
 deno_terminal.workspace = true
-eszip = "=0.75.0"
+eszip = "=0.76.0"
 libsui = "0.3.0"
 napi_sym.workspace = true
 node_resolver.workspace = true
diff --git a/cli/args/lockfile.rs b/cli/args/lockfile.rs
index 00d1f929d..30db49b7a 100644
--- a/cli/args/lockfile.rs
+++ b/cli/args/lockfile.rs
@@ -225,26 +225,12 @@ impl CliLockfile {
           file_path,
           content: &text,
           overwrite: false,
-          is_deno_future: *super::DENO_FUTURE,
         })?,
         frozen,
       )),
-      Err(err) if err.kind() == std::io::ErrorKind::NotFound => {
-        Ok(CliLockfile::new(
-          if *super::DENO_FUTURE {
-            // force version 4 for deno future
-            Lockfile::new(deno_lockfile::NewLockfileOptions {
-              file_path,
-              content: r#"{"version":"4"}"#,
-              overwrite: false,
-              is_deno_future: true,
-            })?
-          } else {
-            Lockfile::new_empty(file_path, false)
-          },
-          frozen,
-        ))
-      }
+      Err(err) if err.kind() == std::io::ErrorKind::NotFound => Ok(
+        CliLockfile::new(Lockfile::new_empty(file_path, false), frozen),
+      ),
       Err(err) => Err(err).with_context(|| {
         format!("Failed reading lockfile '{}'", file_path.display())
       }),
diff --git a/tests/integration/check_tests.rs b/tests/integration/check_tests.rs
index 57c38522f..f0e3dfb5a 100644
--- a/tests/integration/check_tests.rs
+++ b/tests/integration/check_tests.rs
@@ -367,7 +367,6 @@ fn npm_module_check_then_error() {
     file_path: lockfile_path.to_path_buf(),
     content: &lockfile_path.read_to_string(),
     overwrite: false,
-    is_deno_future: false,
   })
   .unwrap();
 
diff --git a/tests/integration/jsr_tests.rs b/tests/integration/jsr_tests.rs
index ef074987e..e72eab1fa 100644
--- a/tests/integration/jsr_tests.rs
+++ b/tests/integration/jsr_tests.rs
@@ -146,7 +146,6 @@ console.log(version);"#,
     file_path: lockfile_path.to_path_buf(),
     content: &lockfile_path.read_to_string(),
     overwrite: false,
-    is_deno_future: false,
   })
   .unwrap();
   *lockfile
@@ -262,7 +261,6 @@ console.log(version);"#,
     file_path: lockfile_path.to_path_buf(),
     content: &lockfile_path.read_to_string(),
     overwrite: false,
-    is_deno_future: false,
   })
   .unwrap();
   let pkg_name = "@denotest/no-module-graph@0.1.1";
diff --git a/tests/integration/npm_tests.rs b/tests/integration/npm_tests.rs
index 9e4eb7efe..d75b87689 100644
--- a/tests/integration/npm_tests.rs
+++ b/tests/integration/npm_tests.rs
@@ -1215,204 +1215,180 @@ fn lock_file_lock_write() {
   let deno_dir = util::new_deno_dir();
   let temp_dir = util::TempDir::new();
 
-  // write empty config file
   temp_dir.write("deno.json", "{}");
-
-  // write a lock file with borked integrity
   let lock_file_content = r#"{
-  "version": "3",
-  "packages": {
-    "specifiers": {
-      "npm:cowsay@1.5.0": "npm:cowsay@1.5.0"
+  "version": "4",
+  "specifiers": {
+    "npm:cowsay@1.5.0": "npm:cowsay@1.5.0"
+  },
+  "npm": {
+    "ansi-regex@3.0.1": {
+      "integrity": "sha512-+O9Jct8wf++lXxxFc4hc8LsjaSq0HFzzL7cVsw8pRDIPdjKD2mT4ytDZlLuSBZ4cLKZFXIrMGO7DbQCtMJJMKw=="
     },
-    "npm": {
-      "ansi-regex@3.0.1": {
-        "integrity": "sha512-+O9Jct8wf++lXxxFc4hc8LsjaSq0HFzzL7cVsw8pRDIPdjKD2mT4ytDZlLuSBZ4cLKZFXIrMGO7DbQCtMJJMKw==",
-        "dependencies": {}
-      },
-      "ansi-regex@5.0.1": {
-        "integrity": "sha512-quJQXlTSUGL2LH9SUXo8VwsY4soanhgo6LNSm84E1LBcE8s3O0wpdiRzyR9z/ZZJMlMWv37qOOb9pdJlMUEKFQ==",
-        "dependencies": {}
-      },
-      "ansi-styles@4.3.0": {
-        "integrity": "sha512-zbB9rCJAT1rbjiVDb2hqKFHNYLxgtk8NURxZ3IZwD3F6NtxbXZQCnnSi1Lkx+IDohdPlFp222wVALIheZJQSEg==",
-        "dependencies": {
-          "color-convert": "color-convert@2.0.1"
-        }
-      },
-      "camelcase@5.3.1": {
-        "integrity": "sha512-L28STB170nwWS63UjtlEOE3dldQApaJXZkOI1uMFfzf3rRuPegHaHesyee+YxQ+W6SvRDQV6UrdOdRiR153wJg==",
-        "dependencies": {}
-      },
-      "cliui@6.0.0": {
-        "integrity": "sha512-t6wbgtoCXvAzst7QgXxJYqPt0usEfbgQdftEPbLL/cvv6HPE5VgvqCuAIDR0NgU52ds6rFwqrgakNLrHEjCbrQ==",
-        "dependencies": {
-          "string-width": "string-width@4.2.3",
-          "strip-ansi": "strip-ansi@6.0.1",
-          "wrap-ansi": "wrap-ansi@6.2.0"
-        }
-      },
-      "color-convert@2.0.1": {
-        "integrity": "sha512-RRECPsj7iu/xb5oKYcsFHSppFNnsj/52OVTRKb4zP5onXwVF3zVmmToNcOfGC+CRDpfK/U584fMg38ZHCaElKQ==",
-        "dependencies": {
-          "color-name": "color-name@1.1.4"
-        }
-      },
-      "color-name@1.1.4": {
-        "integrity": "sha512-dOy+3AuW3a2wNbZHIuMZpTcgjGuLU/uBL/ubcZF9OXbDo8ff4O8yVp5Bf0efS8uEoYo5q4Fx7dY9OgQGXgAsQA==",
-        "dependencies": {}
-      },
-      "cowsay@1.5.0": {
-        "integrity": "sha512-8Ipzr54Z8zROr/62C8f0PdhQcDusS05gKTS87xxdji8VbWefWly0k8BwGK7+VqamOrkv3eGsCkPtvlHzrhWsCA==",
-        "dependencies": {
-          "get-stdin": "get-stdin@8.0.0",
-          "string-width": "string-width@2.1.1",
-          "strip-final-newline": "strip-final-newline@2.0.0",
-          "yargs": "yargs@15.4.1"
-        }
-      },
-      "decamelize@1.2.0": {
-        "integrity": "sha512-z2S+W9X73hAUUki+N+9Za2lBlun89zigOyGrsax+KUQ6wKW4ZoWpEYBkGhQjwAjjDCkWxhY0VKEhk8wzY7F5cA==",
-        "dependencies": {}
-      },
-      "emoji-regex@8.0.0": {
-        "integrity": "sha512-MSjYzcWNOA0ewAHpz0MxpYFvwg6yjy1NG3xteoqz644VCo/RPgnr1/GGt+ic3iJTzQ8Eu3TdM14SawnVUmGE6A==",
-        "dependencies": {}
-      },
-      "find-up@4.1.0": {
-        "integrity": "sha512-PpOwAdQ/YlXQ2vj8a3h8IipDuYRi3wceVQQGYWxNINccq40Anw7BlsEXCMbt1Zt+OLA6Fq9suIpIWD0OsnISlw==",
-        "dependencies": {
-          "locate-path": "locate-path@5.0.0",
-          "path-exists": "path-exists@4.0.0"
-        }
-      },
-      "get-caller-file@2.0.5": {
-        "integrity": "sha512-DyFP3BM/3YHTQOCUL/w0OZHR0lpKeGrxotcHWcqNEdnltqFwXVfhEBQ94eIo34AfQpo0rGki4cyIiftY06h2Fg==",
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-      },
-      "get-stdin@8.0.0": {
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-          "strip-ansi": "strip-ansi@6.0.1"
-        }
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-        }
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-      },
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-        "dependencies": {
-          "ansi-styles": "ansi-styles@4.3.0",
-          "string-width": "string-width@4.2.3",
-          "strip-ansi": "strip-ansi@6.0.1"
-        }
-      },
-      "y18n@4.0.3": {
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-        "dependencies": {
-          "camelcase": "camelcase@5.3.1",
-          "decamelize": "decamelize@1.2.0"
-        }
-      },
-      "yargs@15.4.1": {
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-        "dependencies": {
-          "cliui": "cliui@6.0.0",
-          "decamelize": "decamelize@1.2.0",
-          "find-up": "find-up@4.1.0",
-          "get-caller-file": "get-caller-file@2.0.5",
-          "require-directory": "require-directory@2.1.1",
-          "require-main-filename": "require-main-filename@2.0.0",
-          "set-blocking": "set-blocking@2.0.0",
-          "string-width": "string-width@4.2.3",
-          "which-module": "which-module@2.0.0",
-          "y18n": "y18n@4.0.3",
-          "yargs-parser": "yargs-parser@18.1.3"
-        }
-      }
+    "ansi-regex@5.0.1": {
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+    },
+    "ansi-styles@4.3.0": {
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+      "dependencies": [
+        "color-convert"
+      ]
+    },
+    "camelcase@5.3.1": {
+      "integrity": "sha512-L28STB170nwWS63UjtlEOE3dldQApaJXZkOI1uMFfzf3rRuPegHaHesyee+YxQ+W6SvRDQV6UrdOdRiR153wJg=="
+    },
+    "cliui@6.0.0": {
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+      "dependencies": [
+        "string-width@4.2.3",
+        "strip-ansi@6.0.1",
+        "wrap-ansi"
+      ]
+    },
+    "color-convert@2.0.1": {
+      "integrity": "sha512-RRECPsj7iu/xb5oKYcsFHSppFNnsj/52OVTRKb4zP5onXwVF3zVmmToNcOfGC+CRDpfK/U584fMg38ZHCaElKQ==",
+      "dependencies": [
+        "color-name"
+      ]
+    },
+    "color-name@1.1.4": {
+      "integrity": "sha512-dOy+3AuW3a2wNbZHIuMZpTcgjGuLU/uBL/ubcZF9OXbDo8ff4O8yVp5Bf0efS8uEoYo5q4Fx7dY9OgQGXgAsQA=="
+    },
+    "cowsay@1.5.0": {
+      "integrity": "sha512-8Ipzr54Z8zROr/62C8f0PdhQcDusS05gKTS87xxdji8VbWefWly0k8BwGK7+VqamOrkv3eGsCkPtvlHzrhWsCA==",
+      "dependencies": [
+        "get-stdin",
+        "string-width@2.1.1",
+        "strip-final-newline",
+        "yargs"
+      ]
+    },
+    "decamelize@1.2.0": {
+      "integrity": "sha512-z2S+W9X73hAUUki+N+9Za2lBlun89zigOyGrsax+KUQ6wKW4ZoWpEYBkGhQjwAjjDCkWxhY0VKEhk8wzY7F5cA=="
+    },
+    "emoji-regex@8.0.0": {
+      "integrity": "sha512-MSjYzcWNOA0ewAHpz0MxpYFvwg6yjy1NG3xteoqz644VCo/RPgnr1/GGt+ic3iJTzQ8Eu3TdM14SawnVUmGE6A=="
+    },
+    "find-up@4.1.0": {
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+      "dependencies": [
+        "locate-path",
+        "path-exists"
+      ]
+    },
+    "get-caller-file@2.0.5": {
+      "integrity": "sha512-DyFP3BM/3YHTQOCUL/w0OZHR0lpKeGrxotcHWcqNEdnltqFwXVfhEBQ94eIo34AfQpo0rGki4cyIiftY06h2Fg=="
+    },
+    "get-stdin@8.0.0": {
+      "integrity": "sha512-sY22aA6xchAzprjyqmSEQv4UbAAzRN0L2dQB0NlN5acTTK9Don6nhoc3eAbUnpZiCANAMfd/+40kVdKfFygohg=="
+    },
+    "is-fullwidth-code-point@2.0.0": {
+      "integrity": "sha512-VHskAKYM8RfSFXwee5t5cbN5PZeq1Wrh6qd5bkyiXIf6UQcN6w/A0eXM9r6t8d+GYOh+o6ZhiEnb88LN/Y8m2w=="
+    },
+    "is-fullwidth-code-point@3.0.0": {
+      "integrity": "sha512-zymm5+u+sCsSWyD9qNaejV3DFvhCKclKdizYaJUuHA83RLjb7nSuGnddCHGv0hk+KY7BMAlsWeK4Ueg6EV6XQg=="
+    },
+    "locate-path@5.0.0": {
+      "integrity": "sha512-t7hw9pI+WvuwNJXwk5zVHpyhIqzg2qTlklJOf0mVxGSbe3Fp2VieZcduNYjaLDoy6p9uGpQEGWG87WpMKlNq8g==",
+      "dependencies": [
+        "p-locate"
+      ]
+    },
+    "p-limit@2.3.0": {
+      "integrity": "sha512-//88mFWSJx8lxCzwdAABTJL2MyWB12+eIY7MDL2SqLmAkeKU9qxRvWuSyTjm3FUmpBEMuFfckAIqEaVGUDxb6w==",
+      "dependencies": [
+        "p-try"
+      ]
+    },
+    "p-locate@4.1.0": {
+      "integrity": "sha512-R79ZZ/0wAxKGu3oYMlz8jy/kbhsNrS7SKZ7PxEHBgJ5+F2mtFW2fK2cOtBh1cHYkQsbzFV7I+EoRKe6Yt0oK7A==",
+      "dependencies": [
+        "p-limit"
+      ]
+    },
+    "p-try@2.2.0": {
+      "integrity": "sha512-R4nPAVTAU0B9D35/Gk3uJf/7XYbQcyohSKdvAxIRSNghFl4e71hVoGnBNQz9cWaXxO2I10KTC+3jMdvvoKw6dQ=="
+    },
+    "path-exists@4.0.0": {
+      "integrity": "sha512-ak9Qy5Q7jYb2Wwcey5Fpvg2KoAc/ZIhLSLOSBmRmygPsGwkVVt0fZa0qrtMz+m6tJTAHfZQ8FnmB4MG4LWy7/w=="
+    },
+    "require-directory@2.1.1": {
+      "integrity": "sha512-fGxEI7+wsG9xrvdjsrlmL22OMTTiHRwAMroiEeMgq8gzoLC/PQr7RsRDSTLUg/bZAZtF+TVIkHc6/4RIKrui+Q=="
+    },
+    "require-main-filename@2.0.0": {
+      "integrity": "sha512-NKN5kMDylKuldxYLSUfrbo5Tuzh4hd+2E8NPPX02mZtn1VuREQToYe/ZdlJy+J3uCpfaiGF05e7B8W0iXbQHmg=="
+    },
+    "set-blocking@2.0.0": {
+      "integrity": "sha512-KiKBS8AnWGEyLzofFfmvKwpdPzqiy16LvQfK3yv/fVH7Bj13/wl3JSR1J+rfgRE9q7xUJK4qvgS8raSOeLUehw=="
+    },
+    "string-width@2.1.1": {
+      "integrity": "sha512-nOqH59deCq9SRHlxq1Aw85Jnt4w6KvLKqWVik6oA9ZklXLNIOlqg4F2yrT1MVaTjAqvVwdfeZ7w7aCvJD7ugkw==",
+      "dependencies": [
+        "is-fullwidth-code-point@2.0.0",
+        "strip-ansi@4.0.0"
+      ]
+    },
+    "string-width@4.2.3": {
+      "integrity": "sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==",
+      "dependencies": [
+        "emoji-regex",
+        "is-fullwidth-code-point@3.0.0",
+        "strip-ansi@6.0.1"
+      ]
+    },
+    "strip-ansi@4.0.0": {
+      "integrity": "sha512-4XaJ2zQdCzROZDivEVIDPkcQn8LMFSa8kj8Gxb/Lnwzv9A8VctNZ+lfivC/sV3ivW8ElJTERXZoPBRrZKkNKow==",
+      "dependencies": [
+        "ansi-regex@3.0.1"
+      ]
+    },
+    "strip-ansi@6.0.1": {
+      "integrity": "sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==",
+      "dependencies": [
+        "ansi-regex@5.0.1"
+      ]
+    },
+    "strip-final-newline@2.0.0": {
+      "integrity": "sha512-BrpvfNAE3dcvq7ll3xVumzjKjZQ5tI1sEUIKr3Uoks0XUl45St3FlatVqef9prk4jRDzhW6WZg+3bk93y6pLjA=="
+    },
+    "which-module@2.0.0": {
+      "integrity": "sha512-B+enWhmw6cjfVC7kS8Pj9pCrKSc5txArRyaYGe088shv/FGWH+0Rjx/xPgtsWfsUtS27FkP697E4DDhgrgoc0Q=="
+    },
+    "wrap-ansi@6.2.0": {
+      "integrity": "sha512-r6lPcBGxZXlIcymEu7InxDMhdW0KDxpLgoFLcguasxCaJ/SOIZwINatK9KY/tf+ZrlywOKU0UDj3ATXUBfxJXA==",
+      "dependencies": [
+        "ansi-styles",
+        "string-width@4.2.3",
+        "strip-ansi@6.0.1"
+      ]
+    },
+    "y18n@4.0.3": {
+      "integrity": "sha512-JKhqTOwSrqNA1NY5lSztJ1GrBiUodLMmIZuLiDaMRJ+itFd+ABVE8XBjOvIWL+rSqNDC74LCSFmlb/U4UZ4hJQ=="
+    },
+    "yargs-parser@18.1.3": {
+      "integrity": "sha512-o50j0JeToy/4K6OZcaQmW6lyXXKhq7csREXcDwk2omFPJEwUNOVtJKvmDr9EI1fAJZUyZcRF7kxGBWmRXudrCQ==",
+      "dependencies": [
+        "camelcase",
+        "decamelize"
+      ]
+    },
+    "yargs@15.4.1": {
+      "integrity": "sha512-aePbxDmcYW++PaqBsJ+HYUFwCdv4LVvdnhBy78E57PIor8/OVvhMrADFFEDh8DHDFRv/O9i3lPhsENjO7QX0+A==",
+      "dependencies": [
+        "cliui",
+        "decamelize",
+        "find-up",
+        "get-caller-file",
+        "require-directory",
+        "require-main-filename",
+        "set-blocking",
+        "string-width@4.2.3",
+        "which-module",
+        "y18n",
+        "yargs-parser"
+      ]
     }
-  },
-  "remote": {}
+  }
 }
 "#;
   temp_dir.write("deno.lock", lock_file_content);
@@ -1436,8 +1412,8 @@ fn lock_file_lock_write() {
   let stderr = String::from_utf8(output.stderr).unwrap();
   assert!(stderr.is_empty());
   assert_eq!(
+    std::fs::read_to_string(temp_dir.path().join("deno.lock")).unwrap(),
     lock_file_content,
-    std::fs::read_to_string(temp_dir.path().join("deno.lock")).unwrap()
   );
 }
 
@@ -1452,17 +1428,15 @@ fn auto_discover_lock_file() {
 
   // write a lock file with borked integrity
   let lock_file_content = r#"{
-    "version": "3",
-    "packages": {
-      "specifiers": { "npm:@denotest/bin": "npm:@denotest/bin@1.0.0" },
-      "npm": {
-        "@denotest/bin@1.0.0": {
-          "integrity": "sha512-foobar",
-          "dependencies": {}
-        }
-      }
+    "version": "4",
+    "specifiers": {
+      "npm:@denotest/bin": "npm:@denotest/bin@1.0.0"
     },
-    "remote": {}
+    "npm": {
+      "@denotest/bin@1.0.0": {
+        "integrity": "sha512-foobar"
+      }
+    }
   }"#;
   temp_dir.write("deno.lock", lock_file_content);
 
diff --git a/tests/integration/run_tests.rs b/tests/integration/run_tests.rs
index c6637e005..deec3d1d4 100644
--- a/tests/integration/run_tests.rs
+++ b/tests/integration/run_tests.rs
@@ -853,21 +853,6 @@ itest!(lock_v2_check_ok2 {
 });
 
 #[test]
-fn lock_no_declaration_files() {
-  let context = TestContextBuilder::new()
-    .use_temp_cwd()
-    .use_http_server()
-    .build();
-  let output = context
-    .new_command()
-    .args("cache --lock --lock-write $TESTDATA/lockfile/no_dts/main.ts")
-    .run();
-  output.assert_matches_file("lockfile/no_dts/main.cache.out");
-  let lockfile = context.temp_dir().path().join("deno.lock");
-  lockfile.assert_matches_file("lockfile/no_dts/deno.lock.out");
-}
-
-#[test]
 fn lock_redirects() {
   let context = TestContextBuilder::new()
     .use_temp_cwd()
@@ -886,7 +871,7 @@ fn lock_redirects() {
     .run()
     .skip_output_check();
   let initial_lockfile_text = r#"{
-  "version": "3",
+  "version": "4",
   "redirects": {
     "http://localhost:4546/run/001_hello.js": "http://localhost:4545/run/001_hello.js"
   },
@@ -905,7 +890,7 @@ fn lock_redirects() {
 
   // now try changing where the redirect occurs in the lockfile
   temp_dir.write("deno.lock", r#"{
-  "version": "3",
+  "version": "4",
   "redirects": {
     "http://localhost:4546/run/001_hello.js": "http://localhost:4545/echo.ts"
   },
@@ -936,16 +921,13 @@ fn lock_redirects() {
   util::assertions::assert_wildcard_match(
     &temp_dir.read_to_string("deno.lock"),
     r#"{
-  "version": "3",
-  "packages": {
-    "specifiers": {
-      "npm:@denotest/esm-basic": "npm:@denotest/esm-basic@1.0.0"
-    },
-    "npm": {
-      "@denotest/esm-basic@1.0.0": {
-        "integrity": "sha512-[WILDCARD]",
-        "dependencies": {}
-      }
+  "version": "4",
+  "specifiers": {
+    "npm:@denotest/esm-basic": "npm:@denotest/esm-basic@1.0.0"
+  },
+  "npm": {
+    "@denotest/esm-basic@1.0.0": {
+      "integrity": "sha512-[WILDCARD]"
     }
   },
   "redirects": {
@@ -990,25 +972,21 @@ fn lock_deno_json_package_json_deps() {
   let esm_basic_integrity =
     get_lockfile_npm_package_integrity(&lockfile, "@denotest/esm-basic@1.0.0");
   lockfile.assert_matches_json(json!({
-    "version": "3",
-    "packages": {
-      "specifiers": {
-        "jsr:@denotest/module-graph@1.4": "jsr:@denotest/module-graph@1.4.0",
-        "npm:@denotest/esm-basic": "npm:@denotest/esm-basic@1.0.0"
-      },
-      "jsr": {
-        "@denotest/module-graph@1.4.0": {
-          "integrity": "32de0973c5fa55772326fcd504a757f386d2b010db3e13e78f3bcf851e69473d"
-        }
-      },
-      "npm": {
-        "@denotest/esm-basic@1.0.0": {
-          "integrity": esm_basic_integrity,
-          "dependencies": {}
-        }
+    "version": "4",
+    "specifiers": {
+      "jsr:@denotest/module-graph@1.4": "jsr:@denotest/module-graph@1.4.0",
+      "npm:@denotest/esm-basic": "npm:@denotest/esm-basic@1.0.0"
+    },
+    "jsr": {
+      "@denotest/module-graph@1.4.0": {
+        "integrity": "32de0973c5fa55772326fcd504a757f386d2b010db3e13e78f3bcf851e69473d"
+      }
+    },
+    "npm": {
+      "@denotest/esm-basic@1.0.0": {
+        "integrity": esm_basic_integrity
       }
     },
-    "remote": {},
     "workspace": {
       "dependencies": [
         "jsr:@denotest/module-graph@1.4",
@@ -1042,25 +1020,21 @@ fn lock_deno_json_package_json_deps() {
     .run()
     .skip_output_check();
   lockfile.assert_matches_json(json!({
-    "version": "3",
-    "packages": {
-      "specifiers": {
-        "jsr:@denotest/module-graph@1.4": "jsr:@denotest/module-graph@1.4.0",
-        "npm:@denotest/esm-basic": "npm:@denotest/esm-basic@1.0.0"
-      },
-      "jsr": {
-        "@denotest/module-graph@1.4.0": {
-          "integrity": "32de0973c5fa55772326fcd504a757f386d2b010db3e13e78f3bcf851e69473d"
-        }
-      },
-      "npm": {
-        "@denotest/esm-basic@1.0.0": {
-          "integrity": esm_basic_integrity,
-          "dependencies": {}
-        }
+    "version": "4",
+    "specifiers": {
+      "jsr:@denotest/module-graph@1.4": "jsr:@denotest/module-graph@1.4.0",
+      "npm:@denotest/esm-basic": "npm:@denotest/esm-basic@1.0.0"
+    },
+    "jsr": {
+      "@denotest/module-graph@1.4.0": {
+        "integrity": "32de0973c5fa55772326fcd504a757f386d2b010db3e13e78f3bcf851e69473d"
+      }
+    },
+    "npm": {
+      "@denotest/esm-basic@1.0.0": {
+        "integrity": esm_basic_integrity
       }
     },
-    "remote": {},
     "workspace": {
       "dependencies": [
         "jsr:@denotest/module-graph@1.4"
@@ -1083,18 +1057,15 @@ fn lock_deno_json_package_json_deps() {
     .run()
     .skip_output_check();
   lockfile.assert_matches_json(json!({
-    "version": "3",
-    "packages": {
-      "specifiers": {
-        "jsr:@denotest/module-graph@1.4": "jsr:@denotest/module-graph@1.4.0",
-      },
-      "jsr": {
-        "@denotest/module-graph@1.4.0": {
-          "integrity": "32de0973c5fa55772326fcd504a757f386d2b010db3e13e78f3bcf851e69473d"
-        }
+    "version": "4",
+    "specifiers": {
+      "jsr:@denotest/module-graph@1.4": "jsr:@denotest/module-graph@1.4.0",
+    },
+    "jsr": {
+      "@denotest/module-graph@1.4.0": {
+        "integrity": "32de0973c5fa55772326fcd504a757f386d2b010db3e13e78f3bcf851e69473d"
       }
     },
-    "remote": {},
     "workspace": {
       "dependencies": [
         "jsr:@denotest/module-graph@1.4"
@@ -1112,8 +1083,7 @@ fn lock_deno_json_package_json_deps() {
     .skip_output_check();
 
   lockfile.assert_matches_json(json!({
-    "version": "3",
-    "remote": {}
+    "version": "4"
   }));
 }
 
@@ -1171,24 +1141,19 @@ fn lock_deno_json_package_json_deps_workspace() {
   );
 
   lockfile.assert_matches_json(json!({
-    "version": "3",
-    "packages": {
-      "specifiers": {
-        "npm:@denotest/cjs-default-export@1": "npm:@denotest/cjs-default-export@1.0.0",
-        "npm:@denotest/esm-basic@1": "npm:@denotest/esm-basic@1.0.0"
+    "version": "4",
+    "specifiers": {
+      "npm:@denotest/cjs-default-export@1": "npm:@denotest/cjs-default-export@1.0.0",
+      "npm:@denotest/esm-basic@1": "npm:@denotest/esm-basic@1.0.0"
+    },
+    "npm": {
+      "@denotest/cjs-default-export@1.0.0": {
+        "integrity": cjs_default_export_integrity
       },
-      "npm": {
-        "@denotest/cjs-default-export@1.0.0": {
-          "integrity": cjs_default_export_integrity,
-          "dependencies": {}
-        },
-        "@denotest/esm-basic@1.0.0": {
-          "integrity": esm_basic_integrity,
-          "dependencies": {}
-        }
+      "@denotest/esm-basic@1.0.0": {
+        "integrity": esm_basic_integrity
       }
     },
-    "remote": {},
     "workspace": {
       "packageJson": {
         "dependencies": [
@@ -1219,24 +1184,19 @@ fn lock_deno_json_package_json_deps_workspace() {
     "@denotest/cjs-default-export@1.0.0",
   );
   let expected_lockfile = json!({
-    "version": "3",
-    "packages": {
-      "specifiers": {
-        "npm:@denotest/cjs-default-export@1": "npm:@denotest/cjs-default-export@1.0.0",
-        "npm:@denotest/esm-basic@1": "npm:@denotest/esm-basic@1.0.0"
+    "version": "4",
+    "specifiers": {
+      "npm:@denotest/cjs-default-export@1": "npm:@denotest/cjs-default-export@1.0.0",
+      "npm:@denotest/esm-basic@1": "npm:@denotest/esm-basic@1.0.0"
+    },
+    "npm": {
+      "@denotest/cjs-default-export@1.0.0": {
+        "integrity": cjs_default_export_integrity
       },
-      "npm": {
-        "@denotest/cjs-default-export@1.0.0": {
-          "integrity": cjs_default_export_integrity,
-          "dependencies": {}
-        },
-        "@denotest/esm-basic@1.0.0": {
-          "integrity": esm_basic_integrity,
-          "dependencies": {}
-        }
+      "@denotest/esm-basic@1.0.0": {
+        "integrity": esm_basic_integrity
       }
     },
-    "remote": {},
     "workspace": {
       "packageJson": {
         "dependencies": [
@@ -1275,8 +1235,6 @@ fn get_lockfile_npm_package_integrity(
   // different hashes depending on what operating system it's running on
   lockfile
     .read_json_value()
-    .get("packages")
-    .unwrap()
     .get("npm")
     .unwrap()
     .get(package_name)
diff --git a/tests/specs/lockfile/adding_jsr_dep/lock01.out b/tests/specs/lockfile/adding_jsr_dep/lock01.out
index 0ac007526..fcdb22ae1 100644
--- a/tests/specs/lockfile/adding_jsr_dep/lock01.out
+++ b/tests/specs/lockfile/adding_jsr_dep/lock01.out
@@ -1,16 +1,13 @@
 {
-  "version": "3",
-  "packages": {
-    "specifiers": {
-      "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0"
-    },
-    "jsr": {
-      "@denotest/add@1.0.0": {
-        "integrity": "[WILDLINE]"
-      }
+  "version": "4",
+  "specifiers": {
+    "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0"
+  },
+  "jsr": {
+    "@denotest/add@1.0.0": {
+      "integrity": "[WILDLINE]"
     }
   },
-  "remote": {},
   "workspace": {
     "dependencies": [
       "jsr:@denotest/add@1",
diff --git a/tests/specs/lockfile/adding_jsr_dep/lock02.out b/tests/specs/lockfile/adding_jsr_dep/lock02.out
index 4293c7dfe..f069c5a2f 100644
--- a/tests/specs/lockfile/adding_jsr_dep/lock02.out
+++ b/tests/specs/lockfile/adding_jsr_dep/lock02.out
@@ -1,20 +1,17 @@
 {
-  "version": "3",
-  "packages": {
-    "specifiers": {
-      "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0",
-      "jsr:@denotest/subtract@1": "jsr:@denotest/subtract@1.0.0"
+  "version": "4",
+  "specifiers": {
+    "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0",
+    "jsr:@denotest/subtract@1": "jsr:@denotest/subtract@1.0.0"
+  },
+  "jsr": {
+    "@denotest/add@1.0.0": {
+      "integrity": "[WILDLINE]"
     },
-    "jsr": {
-      "@denotest/add@1.0.0": {
-        "integrity": "[WILDLINE]"
-      },
-      "@denotest/subtract@1.0.0": {
-        "integrity": "[WILDLINE]"
-      }
+    "@denotest/subtract@1.0.0": {
+      "integrity": "[WILDLINE]"
     }
   },
-  "remote": {},
   "workspace": {
     "dependencies": [
       "jsr:@denotest/add@1",
diff --git a/tests/specs/lockfile/adding_jsr_export_new_dep/lock01.out b/tests/specs/lockfile/adding_jsr_export_new_dep/lock01.out
index e78ea355a..a2ce254a3 100644
--- a/tests/specs/lockfile/adding_jsr_export_new_dep/lock01.out
+++ b/tests/specs/lockfile/adding_jsr_export_new_dep/lock01.out
@@ -1,23 +1,20 @@
 {
-  "version": "3",
-  "packages": {
-    "specifiers": {
-      "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0",
-      "jsr:@denotest/different-deps-per-export@1": "jsr:@denotest/different-deps-per-export@1.0.0"
+  "version": "4",
+  "specifiers": {
+    "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0",
+    "jsr:@denotest/different-deps-per-export@1": "jsr:@denotest/different-deps-per-export@1.0.0"
+  },
+  "jsr": {
+    "@denotest/add@1.0.0": {
+      "integrity": "[WILDLINE]"
     },
-    "jsr": {
-      "@denotest/add@1.0.0": {
-        "integrity": "[WILDLINE]"
-      },
-      "@denotest/different-deps-per-export@1.0.0": {
-        "integrity": "[WILDLINE]",
-        "dependencies": [
-          "jsr:@denotest/add@1"
-        ]
-      }
+    "@denotest/different-deps-per-export@1.0.0": {
+      "integrity": "[WILDLINE]",
+      "dependencies": [
+        "jsr:@denotest/add"
+      ]
     }
   },
-  "remote": {},
   "workspace": {
     "dependencies": [
       "jsr:@denotest/different-deps-per-export@1"
diff --git a/tests/specs/lockfile/adding_jsr_export_new_dep/lock02.out b/tests/specs/lockfile/adding_jsr_export_new_dep/lock02.out
index 0f4a388c6..d4825c32d 100644
--- a/tests/specs/lockfile/adding_jsr_export_new_dep/lock02.out
+++ b/tests/specs/lockfile/adding_jsr_export_new_dep/lock02.out
@@ -1,28 +1,25 @@
 {
-  "version": "3",
-  "packages": {
-    "specifiers": {
-      "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0",
-      "jsr:@denotest/different-deps-per-export@1": "jsr:@denotest/different-deps-per-export@1.0.0",
-      "jsr:@denotest/subtract@1": "jsr:@denotest/subtract@1.0.0"
+  "version": "4",
+  "specifiers": {
+    "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0",
+    "jsr:@denotest/different-deps-per-export@1": "jsr:@denotest/different-deps-per-export@1.0.0",
+    "jsr:@denotest/subtract@1": "jsr:@denotest/subtract@1.0.0"
+  },
+  "jsr": {
+    "@denotest/add@1.0.0": {
+      "integrity": "[WILDLINE]"
+    },
+    "@denotest/different-deps-per-export@1.0.0": {
+      "integrity": "[WILDLINE]",
+      "dependencies": [
+        "jsr:@denotest/add",
+        "jsr:@denotest/subtract"
+      ]
     },
-    "jsr": {
-      "@denotest/add@1.0.0": {
-        "integrity": "[WILDLINE]"
-      },
-      "@denotest/different-deps-per-export@1.0.0": {
-        "integrity": "[WILDLINE]",
-        "dependencies": [
-          "jsr:@denotest/add@1",
-          "jsr:@denotest/subtract@1"
-        ]
-      },
-      "@denotest/subtract@1.0.0": {
-        "integrity": "[WILDLINE]"
-      }
+    "@denotest/subtract@1.0.0": {
+      "integrity": "[WILDLINE]"
     }
   },
-  "remote": {},
   "workspace": {
     "dependencies": [
       "jsr:@denotest/different-deps-per-export@1"
diff --git a/tests/specs/lockfile/adding_npm_dep/lock01.out b/tests/specs/lockfile/adding_npm_dep/lock01.out
index 5d5567dc0..0ed6aa8c7 100644
--- a/tests/specs/lockfile/adding_npm_dep/lock01.out
+++ b/tests/specs/lockfile/adding_npm_dep/lock01.out
@@ -1,17 +1,13 @@
 {
-  "version": "3",
-  "packages": {
-    "specifiers": {
-      "npm:@denotest/add@1": "npm:@denotest/add@1.0.0"
-    },
-    "npm": {
-      "@denotest/add@1.0.0": {
-        "integrity": "[WILDLINE]",
-        "dependencies": {}
-      }
+  "version": "4",
+  "specifiers": {
+    "npm:@denotest/add@1": "npm:@denotest/add@1.0.0"
+  },
+  "npm": {
+    "@denotest/add@1.0.0": {
+      "integrity": "[WILDLINE]"
     }
   },
-  "remote": {},
   "workspace": {
     "dependencies": [
       "npm:@denotest/add@1",
diff --git a/tests/specs/lockfile/adding_npm_dep/lock02.out b/tests/specs/lockfile/adding_npm_dep/lock02.out
index 6042b1cb9..7a9da8d29 100644
--- a/tests/specs/lockfile/adding_npm_dep/lock02.out
+++ b/tests/specs/lockfile/adding_npm_dep/lock02.out
@@ -1,22 +1,17 @@
 {
-  "version": "3",
-  "packages": {
-    "specifiers": {
-      "npm:@denotest/add@1": "npm:@denotest/add@1.0.0",
-      "npm:@denotest/subtract@1": "npm:@denotest/subtract@1.0.0"
+  "version": "4",
+  "specifiers": {
+    "npm:@denotest/add@1": "npm:@denotest/add@1.0.0",
+    "npm:@denotest/subtract@1": "npm:@denotest/subtract@1.0.0"
+  },
+  "npm": {
+    "@denotest/add@1.0.0": {
+      "integrity": "[WILDLINE]"
     },
-    "npm": {
-      "@denotest/add@1.0.0": {
-        "integrity": "[WILDLINE]",
-        "dependencies": {}
-      },
-      "@denotest/subtract@1.0.0": {
-        "integrity": "[WILDLINE]",
-        "dependencies": {}
-      }
+    "@denotest/subtract@1.0.0": {
+      "integrity": "[WILDLINE]"
     }
   },
-  "remote": {},
   "workspace": {
     "dependencies": [
       "npm:@denotest/add@1",
diff --git a/tests/specs/lockfile/adding_redirect/lock01.out b/tests/specs/lockfile/adding_redirect/lock01.out
index f00cefa6a..b7b217cd6 100644
--- a/tests/specs/lockfile/adding_redirect/lock01.out
+++ b/tests/specs/lockfile/adding_redirect/lock01.out
@@ -1,5 +1,5 @@
 {
-  "version": "3",
+  "version": "4",
   "remote": {
     "http://localhost:4545/welcome.ts": "7353d5fcbc36c45d26bcbca478cf973092523b07c45999f41319820092b4de31"
   }
diff --git a/tests/specs/lockfile/adding_redirect/lock02.out b/tests/specs/lockfile/adding_redirect/lock02.out
index 70c38c966..1c0227cb9 100644
--- a/tests/specs/lockfile/adding_redirect/lock02.out
+++ b/tests/specs/lockfile/adding_redirect/lock02.out
@@ -1,5 +1,5 @@
 {
-  "version": "3",
+  "version": "4",
   "redirects": {
     "http://localhost:4546/welcome.ts": "http://localhost:4545/welcome.ts"
   },
diff --git a/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_cache.out b/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_cache.out
index bf6c03367..a66e090a2 100644
--- a/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_cache.out
+++ b/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_cache.out
@@ -1,11 +1,10 @@
 error: The lockfile is out of date. Run `deno cache --frozen=false` or rerun with `--frozen=false` to update it.
 changes:
- 5 | -      "npm:@denotest/add@1": "npm:@denotest/add@1.0.0"
- 5 | +      "npm:@denotest/add@1": "npm:@denotest/add@1.0.0",
- 6 | +      "npm:@denotest/subtract@1": "npm:@denotest/subtract@1.0.0"
-11 | -      }
-12 | +      },
-13 | +      "@denotest/subtract@1.0.0": {
-14 | +        "integrity": "[WILDCARD]",
-15 | +        "dependencies": {}
-16 | +      }
+ 4 | -    "npm:@denotest/add@1": "npm:@denotest/add@1.0.0"
+ 4 | +    "npm:@denotest/add@1": "npm:@denotest/add@1.0.0",
+ 5 | +    "npm:@denotest/subtract@1": "npm:@denotest/subtract@1.0.0"
+ 9 | -    }
+10 | +    },
+11 | +    "@denotest/subtract@1.0.0": {
+12 | +      "integrity": "[WILDCARD]"
+13 | +    }
diff --git a/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_dynamic_http.out b/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_dynamic_http.out
index 99c884e9c..3ec45581a 100644
--- a/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_dynamic_http.out
+++ b/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_dynamic_http.out
@@ -1,10 +1,11 @@
 Download http://localhost:4545/welcome.ts
 error: Uncaught (in promise) TypeError: The lockfile is out of date. Run `deno cache --frozen=false` or rerun with `--frozen=false` to update it.
 changes:
-14 | -  "remote": {}
-14 | +  "remote": {
-15 | +    "http://localhost:4545/welcome.ts": "[WILDCARD]"
-16 | +  }
+10 | -  }
+10 | +  },
+11 | +  "remote": {
+12 | +    "http://localhost:4545/welcome.ts": "[WILDCARD]"
+13 | +  }
 const _ = await import(scheme + "localhost:4545/welcome.ts");
           ^
     at [WILDCARD]
\ No newline at end of file
diff --git a/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_dynamic_jsr.out b/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_dynamic_jsr.out
index e77853ab2..7051ecbfa 100644
--- a/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_dynamic_jsr.out
+++ b/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_dynamic_jsr.out
@@ -3,14 +3,14 @@ Download http://127.0.0.1:4250/@denotest/add/1.0.0_meta.json
 Download http://127.0.0.1:4250/@denotest/add/1.0.0/mod.ts
 error: Uncaught (in promise) TypeError: The lockfile is out of date. Run `deno cache --frozen=false` or rerun with `--frozen=false` to update it.
 changes:
- 5 | -      "npm:@denotest/add@1": "npm:@denotest/add@1.0.0"
- 5 | +      "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0",
- 6 | +      "npm:@denotest/add@1": "npm:@denotest/add@1.0.0"
- 7 | +    },
- 8 | +    "jsr": {
- 9 | +      "@denotest/add@1.0.0": {
-10 | +        "integrity": "[WILDCARD]"
-11 | +      }
+ 4 | -    "npm:@denotest/add@1": "npm:@denotest/add@1.0.0"
+ 4 | +    "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0",
+ 5 | +    "npm:@denotest/add@1": "npm:@denotest/add@1.0.0"
+ 6 | +  },
+ 7 | +  "jsr": {
+ 8 | +    "@denotest/add@1.0.0": {
+ 9 | +      "integrity": "[WILDCARD]"
+10 | +    }
 const { add } = await import(scheme + "@denotest/add@1");
                 ^
     at [WILDCARD]
\ No newline at end of file
diff --git a/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_dynamic_npm.out b/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_dynamic_npm.out
index 9b2efa462..749c69587 100644
--- a/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_dynamic_npm.out
+++ b/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_dynamic_npm.out
@@ -1,15 +1,14 @@
 Download http://localhost:4260/@denotest/subtract
 error: Uncaught (in promise) TypeError: The lockfile is out of date. Run `deno cache --frozen=false` or rerun with `--frozen=false` to update it.
 changes:
- 5 | -      "npm:@denotest/add@1": "npm:@denotest/add@1.0.0"
- 5 | +      "npm:@denotest/add@1": "npm:@denotest/add@1.0.0",
- 6 | +      "npm:@denotest/subtract@1": "npm:@denotest/subtract@1.0.0"
-11 | -      }
-12 | +      },
-13 | +      "@denotest/subtract@1.0.0": {
-14 | +        "integrity": "[WILDCARD]",
-15 | +        "dependencies": {}
-16 | +      }
+ 4 | -    "npm:@denotest/add@1": "npm:@denotest/add@1.0.0"
+ 4 | +    "npm:@denotest/add@1": "npm:@denotest/add@1.0.0",
+ 5 | +    "npm:@denotest/subtract@1": "npm:@denotest/subtract@1.0.0"
+ 9 | -    }
+10 | +    },
+11 | +    "@denotest/subtract@1.0.0": {
+12 | +      "integrity": "[WILDCARD]"
+13 | +    }
 const { subtract } = await import(scheme + "@denotest/subtract@1");
                      ^
     at [WILDCARD]
diff --git a/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_jsr_cache.out b/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_jsr_cache.out
index bb523deff..9e77bce85 100644
--- a/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_jsr_cache.out
+++ b/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_jsr_cache.out
@@ -1,12 +1,12 @@
 error: The lockfile is out of date. Run `deno cache --frozen=false` or rerun with `--frozen=false` to update it.
 changes:
- 5 | -      "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0"
- 6 | -    },
- 7 | -    "jsr": {
- 5 | +      "jsr:@denotest/add@0.2.0": "jsr:@denotest/add@0.2.0",
- 6 | +      "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0"
- 7 | +    },
- 8 | +    "jsr": {
- 9 | +      "@denotest/add@0.2.0": {
-10 | +        "integrity": "[WILDCARD]"
-11 | +      },
+ 4 | -    "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0"
+ 5 | -  },
+ 6 | -  "jsr": {
+ 4 | +    "jsr:@denotest/add@0.2.0": "jsr:@denotest/add@0.2.0",
+ 5 | +    "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0"
+ 6 | +  },
+ 7 | +  "jsr": {
+ 8 | +    "@denotest/add@0.2.0": {
+ 9 | +      "integrity": "[WILDCARD]"
+10 | +    },
diff --git a/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_jsr_run.out b/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_jsr_run.out
index 3a0d51678..0222ca355 100644
--- a/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_jsr_run.out
+++ b/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_jsr_run.out
@@ -2,13 +2,13 @@ Download http://127.0.0.1:4250/@denotest/add/0.2.0_meta.json
 Download http://127.0.0.1:4250/@denotest/add/0.2.0/mod.ts
 error: The lockfile is out of date. Run `deno cache --frozen=false` or rerun with `--frozen=false` to update it.
 changes:
- 5 | -      "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0"
- 6 | -    },
- 7 | -    "jsr": {
- 5 | +      "jsr:@denotest/add@0.2.0": "jsr:@denotest/add@0.2.0",
- 6 | +      "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0"
- 7 | +    },
- 8 | +    "jsr": {
- 9 | +      "@denotest/add@0.2.0": {
-10 | +        "integrity": "[WILDCARD]"
-11 | +      },
+ 4 | -    "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0"
+ 5 | -  },
+ 6 | -  "jsr": {
+ 4 | +    "jsr:@denotest/add@0.2.0": "jsr:@denotest/add@0.2.0",
+ 5 | +    "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0"
+ 6 | +  },
+ 7 | +  "jsr": {
+ 8 | +    "@denotest/add@0.2.0": {
+ 9 | +      "integrity": "[WILDCARD]"
+10 | +    },
diff --git a/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_run.out b/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_run.out
index 6dad6f6f4..d8ab302b7 100644
--- a/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_run.out
+++ b/tests/specs/lockfile/frozen_lockfile/frozen_new_dep_run.out
@@ -1,12 +1,11 @@
 Download http://localhost:4260/@denotest/subtract
 error: The lockfile is out of date. Run `deno cache --frozen=false` or rerun with `--frozen=false` to update it.
 changes:
- 5 | -      "npm:@denotest/add@1": "npm:@denotest/add@1.0.0"
- 5 | +      "npm:@denotest/add@1": "npm:@denotest/add@1.0.0",
- 6 | +      "npm:@denotest/subtract@1": "npm:@denotest/subtract@1.0.0"
-11 | -      }
-12 | +      },
-13 | +      "@denotest/subtract@1.0.0": {
-14 | +        "integrity": "[WILDCARD]",
-15 | +        "dependencies": {}
-16 | +      }
+ 4 | -    "npm:@denotest/add@1": "npm:@denotest/add@1.0.0"
+ 4 | +    "npm:@denotest/add@1": "npm:@denotest/add@1.0.0",
+ 5 | +    "npm:@denotest/subtract@1": "npm:@denotest/subtract@1.0.0"
+ 9 | -    }
+10 | +    },
+11 | +    "@denotest/subtract@1.0.0": {
+12 | +      "integrity": "[WILDCARD]"
+13 | +    }
diff --git a/tests/specs/lockfile/frozen_lockfile/no_lockfile_run.out b/tests/specs/lockfile/frozen_lockfile/no_lockfile_run.out
index 2ae84b110..e482c469f 100644
--- a/tests/specs/lockfile/frozen_lockfile/no_lockfile_run.out
+++ b/tests/specs/lockfile/frozen_lockfile/no_lockfile_run.out
@@ -3,18 +3,14 @@ error: The lockfile is out of date. Run `deno cache --frozen=false` or rerun wit
 changes:
  1 | -
  1 | +{
- 2 | +  "version": "3",
- 3 | +  "packages": {
- 4 | +    "specifiers": {
- 5 | +      "npm:@denotest/add@1": "npm:@denotest/add@1.0.0"
- 6 | +    },
- 7 | +    "npm": {
- 8 | +      "@denotest/add@1.0.0": {
- 9 | +        "integrity": "[WILDCARD]",
-10 | +        "dependencies": {}
-11 | +      }
-12 | +    }
-13 | +  },
-14 | +  "remote": {}
-15 | +}
-16 | +
+ 2 | +  "version": "4",
+ 3 | +  "specifiers": {
+ 4 | +    "npm:@denotest/add@1": "npm:@denotest/add@1.0.0"
+ 5 | +  },
+ 6 | +  "npm": {
+ 7 | +    "@denotest/add@1.0.0": {
+ 8 | +      "integrity": "[WILDCARD]"
+ 9 | +    }
+10 | +  }
+11 | +}
+12 | +
diff --git a/tests/specs/lockfile/no_declaration_files/__test__.jsonc b/tests/specs/lockfile/no_declaration_files/__test__.jsonc
new file mode 100644
index 000000000..8bbb55825
--- /dev/null
+++ b/tests/specs/lockfile/no_declaration_files/__test__.jsonc
@@ -0,0 +1,13 @@
+{
+  "tempDir": true,
+  "steps": [{
+    "args": "cache --lock --lock-write main.ts",
+    "output": "main.cache.out"
+  }, {
+    "args": [
+      "eval",
+      "console.log(Deno.readTextFileSync('deno.lock').trim())"
+    ],
+    "output": "deno.lock.out"
+  }]
+}
diff --git a/tests/testdata/lockfile/no_dts/deno.lock.out b/tests/specs/lockfile/no_declaration_files/deno.lock.out
index 6aa547e28..3066e9b15 100644
--- a/tests/testdata/lockfile/no_dts/deno.lock.out
+++ b/tests/specs/lockfile/no_declaration_files/deno.lock.out
@@ -1,5 +1,5 @@
 {
-  "version": "3",
+  "version": "4",
   "remote": {
     "http://localhost:4545/lockfile/no_dts/mod.js": "3f576f37a301d298c3032eb1835240bd83f3762db26fc1d358c5d67088d6ffc8"
   }
diff --git a/tests/testdata/lockfile/no_dts/main.cache.out b/tests/specs/lockfile/no_declaration_files/main.cache.out
index 84e728d66..84e728d66 100644
--- a/tests/testdata/lockfile/no_dts/main.cache.out
+++ b/tests/specs/lockfile/no_declaration_files/main.cache.out
diff --git a/tests/testdata/lockfile/no_dts/main.ts b/tests/specs/lockfile/no_declaration_files/main.ts
index 7596e1e1a..7596e1e1a 100644
--- a/tests/testdata/lockfile/no_dts/main.ts
+++ b/tests/specs/lockfile/no_declaration_files/main.ts
diff --git a/tests/specs/lockfile/only_package_json/deno.lock.out b/tests/specs/lockfile/only_package_json/deno.lock.out
index b30232996..395190a66 100644
--- a/tests/specs/lockfile/only_package_json/deno.lock.out
+++ b/tests/specs/lockfile/only_package_json/deno.lock.out
@@ -1,14 +1,11 @@
 {
-  "version": "3",
-  "packages": {
-    "specifiers": {
-      "npm:@denotest/esm-basic": "npm:@denotest/esm-basic@1.0.0"
-    },
-    "npm": {
-      "@denotest/esm-basic@1.0.0": [WILDCARD]
-    }
+  "version": "4",
+  "specifiers": {
+    "npm:@denotest/esm-basic": "npm:@denotest/esm-basic@1.0.0"
+  },
+  "npm": {
+    "@denotest/esm-basic@1.0.0": [WILDCARD]
   },
-  "remote": {},
   "workspace": {
     "packageJson": {
       "dependencies": [
diff --git a/tests/specs/npm/adding_npm_dep_in_dynamic_import/lock.out b/tests/specs/npm/adding_npm_dep_in_dynamic_import/lock.out
index c67be75c9..c8caafc07 100644
--- a/tests/specs/npm/adding_npm_dep_in_dynamic_import/lock.out
+++ b/tests/specs/npm/adding_npm_dep_in_dynamic_import/lock.out
@@ -1,20 +1,15 @@
 {
-  "version": "3",
-  "packages": {
-    "specifiers": {
-      "npm:@denotest/add": "npm:@denotest/add@1.0.0",
-      "npm:@denotest/subtract": "npm:@denotest/subtract@1.0.0"
+  "version": "4",
+  "specifiers": {
+    "npm:@denotest/add": "npm:@denotest/add@1.0.0",
+    "npm:@denotest/subtract": "npm:@denotest/subtract@1.0.0"
+  },
+  "npm": {
+    "@denotest/add@1.0.0": {
+      "integrity": "[WILDLINE]"
     },
-    "npm": {
-      "@denotest/add@1.0.0": {
-        "integrity": "[WILDLINE]",
-        "dependencies": {}
-      },
-      "@denotest/subtract@1.0.0": {
-        "integrity": "[WILDLINE]",
-        "dependencies": {}
-      }
+    "@denotest/subtract@1.0.0": {
+      "integrity": "[WILDLINE]"
     }
-  },
-  "remote": {}
+  }
 }
diff --git a/tests/specs/remove/basic/add_lock.out b/tests/specs/remove/basic/add_lock.out
index cda0fc34a..99127b95d 100644
--- a/tests/specs/remove/basic/add_lock.out
+++ b/tests/specs/remove/basic/add_lock.out
@@ -1,20 +1,17 @@
 {
-  "version": "3",
-  "packages": {
-    "specifiers": {
-      "jsr:@std/assert@^1.0.0": "jsr:@std/assert@1.0.0",
-      "jsr:@std/http@^1.0.0": "jsr:@std/http@1.0.0"
+  "version": "4",
+  "specifiers": {
+    "jsr:@std/assert@^1.0.0": "jsr:@std/assert@1.0.0",
+    "jsr:@std/http@^1.0.0": "jsr:@std/http@1.0.0"
+  },
+  "jsr": {
+    "@std/assert@1.0.0": {
+      "integrity": "[WILDLINE]"
     },
-    "jsr": {
-      "@std/assert@1.0.0": {
-        "integrity": "[WILDLINE]"
-      },
-      "@std/http@1.0.0": {
-        "integrity": "[WILDLINE]"
-      }
+    "@std/http@1.0.0": {
+      "integrity": "[WILDLINE]"
     }
   },
-  "remote": {},
   "workspace": {
     "dependencies": [
       "jsr:@std/assert@^1.0.0",
diff --git a/tests/specs/remove/basic/remove_lock.out b/tests/specs/remove/basic/remove_lock.out
index 37f10ce95..a39b837e9 100644
--- a/tests/specs/remove/basic/remove_lock.out
+++ b/tests/specs/remove/basic/remove_lock.out
@@ -1,4 +1,3 @@
 {
-  "version": "3",
-  "remote": {}
+  "version": "4"
 }
diff --git a/tests/specs/workspaces/lockfile/expected-lock.out b/tests/specs/workspaces/lockfile/expected-lock.out
index dcc479a20..fc387c760 100644
--- a/tests/specs/workspaces/lockfile/expected-lock.out
+++ b/tests/specs/workspaces/lockfile/expected-lock.out
@@ -1,16 +1,13 @@
 {
-  "version": "3",
-  "packages": {
-    "specifiers": {
-      "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0"
-    },
-    "jsr": {
-      "@denotest/add@1.0.0": {
-        "integrity": "3b2e675c1ad7fba2a45bc251992e01aff08a3c974ac09079b11e6a5b95d4bfcb"
-      }
+  "version": "4",
+  "specifiers": {
+    "jsr:@denotest/add@1": "jsr:@denotest/add@1.0.0"
+  },
+  "jsr": {
+    "@denotest/add@1.0.0": {
+      "integrity": "3b2e675c1ad7fba2a45bc251992e01aff08a3c974ac09079b11e6a5b95d4bfcb"
     }
   },
-  "remote": {},
   "workspace": {
     "members": {
       "pkg": {
diff --git a/tests/testdata/run/lock_check_ok2.json b/tests/testdata/run/lock_check_ok2.json
index 14d8b7117..55a6f9892 100644
--- a/tests/testdata/run/lock_check_ok2.json
+++ b/tests/testdata/run/lock_check_ok2.json
@@ -1,5 +1,5 @@
 {
-  "version": "3",
+  "version": "4",
   "remote": {
     "http://localhost:4545/subdir/mt_application_ecmascript.j2.js": "3a3e002e2f92dc8f045bd4a7c66b4791453ad0417b038dd2b2d9d0f277c44f18",
     "http://localhost:4545/subdir/mt_application_x_javascript.j4.js": "3a3e002e2f92dc8f045bd4a7c66b4791453ad0417b038dd2b2d9d0f277c44f18",