fix: upgrade deno_ast related crates (#23187)

Had to revert back swc due to
https://github.com/swc-project/swc/issues/8840

Fixes:

- https://github.com/denoland/deno_lint/pull/1262
- https://github.com/denoland/deno_doc/pull/538
- https://github.com/denoland/deno_doc/pull/537
- https://github.com/denoland/deno_graph/pull/430
- https://github.com/denoland/deno_graph/pull/425
- https://github.com/denoland/deno_graph/pull/432

21 files changed, 219 insertions, 158 deletions

diff --git a/.dprint.json b/.dprint.json
index e0666c9cf..38b31e3dd 100644
--- a/.dprint.json
+++ b/.dprint.json
@@ -56,7 +56,7 @@
     "ext/websocket/autobahn/reports"
   ],
   "plugins": [
-    "https://plugins.dprint.dev/typescript-0.89.3.wasm",
+    "https://plugins.dprint.dev/typescript-0.90.1.wasm",
     "https://plugins.dprint.dev/json-0.19.2.wasm",
     "https://plugins.dprint.dev/markdown-0.16.4.wasm",
     "https://plugins.dprint.dev/toml-0.6.1.wasm",
diff --git a/Cargo.lock b/Cargo.lock
index 05653e85f..1624f3bcf 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -200,9 +200,9 @@ dependencies = [
 
 [[package]]
 name = "anyhow"
-version = "1.0.79"
+version = "1.0.81"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "080e9890a082662b09c1ad45f567faeeb47f22b5fb23895fbe1e651e718e25ca"
+checksum = "0952808a6c2afd1aa8947271f3a60f1a6763c7b912d210184c5149b5cf147247"
 
 [[package]]
 name = "arrayvec"
@@ -447,9 +447,9 @@ checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a"
 
 [[package]]
 name = "bitflags"
-version = "2.4.1"
+version = "2.5.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "327762f6e5a765692301e5bb513e0d9fef63be86bbc14528052b1cd3e6f03e07"
+checksum = "cf4b9d6a944f767f8e5e0db018570623c85f3d925ac718db4e06d0187adb21c1"
 dependencies = [
  "serde",
 ]
@@ -951,7 +951,7 @@ version = "0.7.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "e16e44ab292b1dddfdaf7be62cfd8877df52f2f3fde5858d95bab606be259f20"
 dependencies = [
- "bitflags 2.4.1",
+ "bitflags 2.5.0",
  "libloading 0.8.1",
  "winapi",
 ]
@@ -1131,9 +1131,9 @@ dependencies = [
 
 [[package]]
 name = "deno_ast"
-version = "0.34.2"
+version = "0.36.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "58d986a1df3f1538ffa04162b5c5f00b856121391b860dc003bde2a6a741e878"
+checksum = "ff757b9a40f67682e34c2806a2d5a0331449acad467ab53e783cad8092675e50"
 dependencies = [
  "anyhow",
  "base64",
@@ -1346,9 +1346,9 @@ dependencies = [
 
 [[package]]
 name = "deno_doc"
-version = "0.119.0"
+version = "0.123.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "cbaec0d12c5f161bc96cf077874b586e860538663791d3e5d7df867af2d5f3ec"
+checksum = "a185c2d8aa17865002e9c5ee5652534ff11406b1633833306366e1aaa37a273a"
 dependencies = [
  "ammonia",
  "anyhow",
@@ -1370,9 +1370,9 @@ dependencies = [
 
 [[package]]
 name = "deno_emit"
-version = "0.38.2"
+version = "0.39.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "23593513889bc5d607f9750c858f9cc113f47cb045d87eea7c6cd6605639915c"
+checksum = "9f13249307b7c8ae93989de7752f512acaea63ba1653717d432e69f22b2cd8af"
 dependencies = [
  "anyhow",
  "base64",
@@ -1442,9 +1442,9 @@ dependencies = [
 
 [[package]]
 name = "deno_graph"
-version = "0.69.10"
+version = "0.71.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0e6442f864bb39619f9485220f5cd18ca73ad3a5fb352accd5dc39b24bc88543"
+checksum = "198e0be3da5754b2c1bc6e4c53280c79ca101eb9065f98db8fbae423c64edae5"
 dependencies = [
  "anyhow",
  "async-trait",
@@ -1557,9 +1557,9 @@ dependencies = [
 
 [[package]]
 name = "deno_lint"
-version = "0.58.0"
+version = "0.58.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3344701fc527a920b4f00562052d3feca8ce315bb9327305b07d5820019a9ead"
+checksum = "7b00040be64c6ef7b64feff6bc85c4622baad854f3677ed3ab9e90c8884918e5"
 dependencies = [
  "anyhow",
  "deno_ast",
@@ -2266,9 +2266,9 @@ dependencies = [
 
 [[package]]
 name = "dprint-plugin-typescript"
-version = "0.89.3"
+version = "0.90.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8d572ba77c357e38c0bc08290fa5a1cf191e772c26bb030bd8eedc1c5faae649"
+checksum = "d7a7c11f665ef4e305eee57b7643fe5f639ae9c322b64cda115ab78b183c8dc1"
 dependencies = [
  "anyhow",
  "deno_ast",
@@ -2369,9 +2369,9 @@ dependencies = [
 
 [[package]]
 name = "either"
-version = "1.9.0"
+version = "1.10.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a26ae43d7bcc3b814de94796a5e736d4029efb0ee900c12e2d54c993ad1a1e07"
+checksum = "11157ac094ffbdde99aa67b23417ebdd801842852b500e395a45a9c0aac03e4a"
 
 [[package]]
 name = "elliptic-curve"
@@ -2494,9 +2494,9 @@ dependencies = [
 
 [[package]]
 name = "eszip"
-version = "0.64.2"
+version = "0.66.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "97374d7fd863b2b44ca217e739a1eb83361d0e5e2358d201145dac1aa3fa6a21"
+checksum = "fcdec9b6ed381fb66c53ec7563f55db04885b7646fccfb7a58a807804c813db9"
 dependencies = [
  "anyhow",
  "base64",
@@ -2958,7 +2958,7 @@ version = "0.6.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "fbcd2dba93594b227a1f57ee09b8b9da8892c34d55aa332e034a228d0fe6a171"
 dependencies = [
- "bitflags 2.4.1",
+ "bitflags 2.5.0",
  "gpu-alloc-types",
 ]
 
@@ -2968,7 +2968,7 @@ version = "0.3.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "98ff03b468aa837d70984d55f5d3f846f6ec31fe34bbb97c4f85219caeee1ca4"
 dependencies = [
- "bitflags 2.4.1",
+ "bitflags 2.5.0",
 ]
 
 [[package]]
@@ -2991,7 +2991,7 @@ version = "0.2.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "cc11df1ace8e7e564511f53af41f3e42ddc95b56fd07b3f4445d2a6048bc682c"
 dependencies = [
- "bitflags 2.4.1",
+ "bitflags 2.5.0",
  "gpu-descriptor-types",
  "hashbrown 0.14.3",
 ]
@@ -3002,7 +3002,7 @@ version = "0.1.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "6bf0b36e6f090b7e1d8a4b49c0cb81c1f8376f72198c65dd3ad9ff3556b8b78c"
 dependencies = [
- "bitflags 2.4.1",
+ "bitflags 2.5.0",
 ]
 
 [[package]]
@@ -3180,15 +3180,16 @@ dependencies = [
 
 [[package]]
 name = "hstr"
-version = "0.2.6"
+version = "0.2.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "de90d3db62411eb62eddabe402d706ac4970f7ac8d088c05f11069cad9be9857"
+checksum = "5a9de2bdef6354361892492bab5e316b2d78a0ee9971db4d36da9b1eb0e11999"
 dependencies = [
+ "hashbrown 0.14.3",
  "new_debug_unreachable",
  "once_cell",
  "phf 0.11.2",
  "rustc-hash",
- "smallvec",
+ "triomphe",
 ]
 
 [[package]]
@@ -3454,9 +3455,9 @@ dependencies = [
 
 [[package]]
 name = "indexmap"
-version = "2.1.0"
+version = "2.2.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d530e1a18b1cb4c484e6e34556a0d948706958449fca0cab753d649f2bce3d1f"
+checksum = "168fb715dda47215e360912c096649d23d58bf392ac62f73919e831745e40f26"
 dependencies = [
  "equivalent",
  "hashbrown 0.14.3",
@@ -3531,12 +3532,11 @@ dependencies = [
 
 [[package]]
 name = "is-macro"
-version = "0.3.1"
+version = "0.3.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "bc74b7abae208af9314a406bd7dcc65091230b6e749c09e07a645885fecf34f9"
+checksum = "59a85abdc13717906baccb5a1e435556ce0df215f242892f721dff62bf25288f"
 dependencies = [
  "Inflector",
- "pmutil",
  "proc-macro2",
  "quote",
  "syn 2.0.48",
@@ -4001,7 +4001,7 @@ version = "0.27.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "c43f73953f8cbe511f021b58f18c3ce1c3d1ae13fe953293e13345bf83217f25"
 dependencies = [
- "bitflags 2.4.1",
+ "bitflags 2.5.0",
  "block",
  "core-graphics-types",
  "foreign-types",
@@ -4063,7 +4063,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "ae585df4b6514cf8842ac0f1ab4992edc975892704835b549cf818dc0191249e"
 dependencies = [
  "bit-set",
- "bitflags 2.4.1",
+ "bitflags 2.5.0",
  "codespan-reporting",
  "hexf-parse",
  "indexmap",
@@ -4154,7 +4154,7 @@ version = "0.27.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "2eb04e9c688eff1c89d72b407f168cf79bb9e867a9d3323ed6c01519eb9cc053"
 dependencies = [
- "bitflags 2.4.1",
+ "bitflags 2.5.0",
  "cfg-if",
  "libc",
 ]
@@ -5249,7 +5249,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "b91f7eff05f748767f183df4320a63d6936e9c6107d97c9e6bdd9784f4289c94"
 dependencies = [
  "base64",
- "bitflags 2.4.1",
+ "bitflags 2.5.0",
  "serde",
  "serde_derive",
 ]
@@ -5280,7 +5280,7 @@ version = "0.29.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "549b9d036d571d42e6e85d1c1425e2ac83491075078ca9a15be021c56b1641f2"
 dependencies = [
- "bitflags 2.4.1",
+ "bitflags 2.5.0",
  "fallible-iterator",
  "fallible-streaming-iterator",
  "hashlink",
@@ -5333,7 +5333,7 @@ version = "0.38.27"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "bfeae074e687625746172d639330f1de242a178bf3189b51e35a7a21573513ac"
 dependencies = [
- "bitflags 2.4.1",
+ "bitflags 2.5.0",
  "errno 0.3.8",
  "libc",
  "linux-raw-sys",
@@ -5407,7 +5407,7 @@ version = "13.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "02a2d683a4ac90aeef5b1013933f6d977bd37d51ff3f4dad829d4931a7e6be86"
 dependencies = [
- "bitflags 2.4.1",
+ "bitflags 2.5.0",
  "cfg-if",
  "clipboard-win",
  "fd-lock",
@@ -5577,9 +5577,9 @@ checksum = "388a1df253eca08550bef6c72392cfe7c30914bf41df5269b68cbd6ff8f570a3"
 
 [[package]]
 name = "serde"
-version = "1.0.195"
+version = "1.0.197"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "63261df402c67811e9ac6def069e4786148c4563f4b50fd4bf30aa370d626b02"
+checksum = "3fb1c873e1b9b056a4dc4c0c198b24c3ffa059243875552b2bd0933b1aee4ce2"
 dependencies = [
  "serde_derive",
 ]
@@ -5605,9 +5605,9 @@ dependencies = [
 
 [[package]]
 name = "serde_derive"
-version = "1.0.195"
+version = "1.0.197"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "46fe8f8603d81ba86327b23a2e9cdf49e1255fb94a4c5f297f6ee0547178ea2c"
+checksum = "7eb0b34b42edc17f6b7cac84a52a1c5f0e1bb2227e997ca9011ea3dd34e8610b"
 dependencies = [
  "proc-macro2",
  "quote",
@@ -5616,9 +5616,9 @@ dependencies = [
 
 [[package]]
 name = "serde_json"
-version = "1.0.111"
+version = "1.0.115"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "176e46fa42316f18edd598015a5166857fc835ec732f5215eac6b7bdbf0a84f4"
+checksum = "12dc5c46daa8e9fdf4f5e71b6cf9a53f2487da0e86e55808e2d35539666497dd"
 dependencies = [
  "indexmap",
  "itoa",
@@ -5895,6 +5895,12 @@ dependencies = [
 ]
 
 [[package]]
+name = "stable_deref_trait"
+version = "1.2.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "a8f112729512f8e442d81f95a8a7ddf2b7c6b8a1a6f509a95864142b30cab2d3"
+
+[[package]]
 name = "stacker"
 version = "0.1.15"
 source = "registry+https://github.com/rust-lang/crates.io-index"
@@ -6108,7 +6114,7 @@ version = "0.112.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "36226eb87bfd2f5620bde04f149a4b869ab34e78496d60cb0d8eb9da765d0732"
 dependencies = [
- "bitflags 2.4.1",
+ "bitflags 2.5.0",
  "is-macro",
  "num-bigint",
  "phf 0.11.2",
@@ -6194,7 +6200,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "66539401f619730b26d380a120b91b499f80cbdd9bb15d00aa73bc3a4d4cc394"
 dependencies = [
  "better_scoped_tls",
- "bitflags 2.4.1",
+ "bitflags 2.5.0",
  "indexmap",
  "once_cell",
  "phf 0.11.2",
@@ -6848,6 +6854,16 @@ dependencies = [
 ]
 
 [[package]]
+name = "triomphe"
+version = "0.1.11"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "859eb650cfee7434994602c3a68b25d77ad9e68c8a6cd491616ef86661382eb3"
+dependencies = [
+ "serde",
+ "stable_deref_trait",
+]
+
+[[package]]
 name = "trust-dns-client"
 version = "0.22.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
@@ -7147,7 +7163,7 @@ version = "0.89.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "fe2197fbef82c98f7953d13568a961d4e1c663793b5caf3c74455a13918cdf33"
 dependencies = [
- "bitflags 2.4.1",
+ "bitflags 2.5.0",
  "fslock",
  "gzip-header",
  "home",
@@ -7342,7 +7358,7 @@ checksum = "ef91c1d62d1e9e81c79e600131a258edf75c9531cbdbde09c44a011a47312726"
 dependencies = [
  "arrayvec",
  "bit-vec",
- "bitflags 2.4.1",
+ "bitflags 2.5.0",
  "codespan-reporting",
  "log",
  "naga",
@@ -7369,7 +7385,7 @@ dependencies = [
  "arrayvec",
  "ash",
  "bit-set",
- "bitflags 2.4.1",
+ "bitflags 2.5.0",
  "block",
  "core-graphics-types",
  "d3d12",
@@ -7406,7 +7422,7 @@ version = "0.18.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "0d5ed5f0edf0de351fe311c53304986315ce866f394a2e6df0c4b3c70774bcdd"
 dependencies = [
- "bitflags 2.4.1",
+ "bitflags 2.5.0",
  "js-sys",
  "serde",
  "web-sys",
diff --git a/Cargo.toml b/Cargo.toml
index 30e7e168f..e0d499718 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -43,7 +43,7 @@ license = "MIT"
 repository = "https://github.com/denoland/deno"
 
 [workspace.dependencies]
-deno_ast = { version = "0.34.1", features = ["transpiling"] }
+deno_ast = { version = "0.36.1", features = ["transpiling"] }
 deno_core = { version = "0.272.0" }
 
 deno_bench_util = { version = "0.139.0", path = "./bench_util" }
diff --git a/cli/Cargo.toml b/cli/Cargo.toml
index 6e0e5f2bb..a9d7b707b 100644
--- a/cli/Cargo.toml
+++ b/cli/Cargo.toml
@@ -66,17 +66,17 @@ deno_ast = { workspace = true, features = ["bundler", "cjs", "codegen", "proposa
 deno_cache_dir = { workspace = true }
 deno_config = "=0.15.0"
 deno_core = { workspace = true, features = ["include_js_files_for_snapshotting"] }
-deno_doc = { version = "=0.119.0", features = ["html"] }
-deno_emit = "=0.38.2"
-deno_graph = { version = "=0.69.10", features = ["tokio_executor"] }
-deno_lint = { version = "=0.58.0", features = ["docs"] }
+deno_doc = { version = "=0.123.1", features = ["html"] }
+deno_emit = "=0.39.0"
+deno_graph = { version = "=0.71.1", features = ["tokio_executor"] }
+deno_lint = { version = "=0.58.2", features = ["docs"] }
 deno_lockfile.workspace = true
 deno_npm = "=0.17.0"
 deno_runtime = { workspace = true, features = ["include_js_files_for_snapshotting"] }
 deno_semver = "=0.5.4"
 deno_task_shell = "=0.16.0"
 deno_terminal.workspace = true
-eszip = "=0.64.2"
+eszip = "=0.66.0"
 napi_sym.workspace = true
 
 async-trait.workspace = true
@@ -98,7 +98,7 @@ dotenvy = "0.15.7"
 dprint-plugin-json = "=0.19.2"
 dprint-plugin-jupyter = "=0.1.3"
 dprint-plugin-markdown = "=0.16.4"
-dprint-plugin-typescript = "=0.89.3"
+dprint-plugin-typescript = "=0.90.1"
 env_logger = "=0.10.0"
 fancy-regex = "=0.10.0"
 faster-hex.workspace = true
diff --git a/cli/args/mod.rs b/cli/args/mod.rs
index 2d0df3d3c..d225b73f2 100644
--- a/cli/args/mod.rs
+++ b/cli/args/mod.rs
@@ -10,6 +10,7 @@ pub mod package_json;
 pub use self::import_map::resolve_import_map;
 use self::package_json::PackageJsonDeps;
 use ::import_map::ImportMap;
+use deno_ast::SourceMapOption;
 use deno_core::resolve_url_or_path;
 use deno_npm::resolution::ValidSerializedNpmResolutionSnapshot;
 use deno_npm::NpmSystemInfo;
@@ -146,9 +147,9 @@ pub fn jsr_api_url() -> &'static Url {
   &JSR_API_URL
 }
 
-pub fn ts_config_to_emit_options(
+pub fn ts_config_to_transpile_and_emit_options(
   config: deno_config::TsConfig,
-) -> deno_ast::EmitOptions {
+) -> (deno_ast::TranspileOptions, deno_ast::EmitOptions) {
   let options: deno_config::EmitConfigOptions =
     serde_json::from_value(config.0).unwrap();
   let imports_not_used_as_values =
@@ -165,23 +166,34 @@ pub fn ts_config_to_emit_options(
       "precompile" => (false, false, false, true),
       _ => (false, false, false, false),
     };
-  deno_ast::EmitOptions {
-    use_ts_decorators: options.experimental_decorators,
-    use_decorators_proposal: !options.experimental_decorators,
-    emit_metadata: options.emit_decorator_metadata,
-    imports_not_used_as_values,
-    inline_source_map: options.inline_source_map,
-    inline_sources: options.inline_sources,
-    source_map: options.source_map,
-    jsx_automatic,
-    jsx_development,
-    jsx_factory: options.jsx_factory,
-    jsx_fragment_factory: options.jsx_fragment_factory,
-    jsx_import_source: options.jsx_import_source,
-    precompile_jsx,
-    transform_jsx,
-    var_decl_imports: false,
-  }
+  let source_map = if options.inline_source_map {
+    SourceMapOption::Inline
+  } else if options.source_map {
+    SourceMapOption::Separate
+  } else {
+    SourceMapOption::None
+  };
+  (
+    deno_ast::TranspileOptions {
+      use_ts_decorators: options.experimental_decorators,
+      use_decorators_proposal: !options.experimental_decorators,
+      emit_metadata: options.emit_decorator_metadata,
+      imports_not_used_as_values,
+      jsx_automatic,
+      jsx_development,
+      jsx_factory: options.jsx_factory,
+      jsx_fragment_factory: options.jsx_fragment_factory,
+      jsx_import_source: options.jsx_import_source,
+      precompile_jsx,
+      transform_jsx,
+      var_decl_imports: false,
+    },
+    deno_ast::EmitOptions {
+      inline_sources: options.inline_sources,
+      keep_comments: false,
+      source_map,
+    },
+  )
 }
 
 /// Indicates how cached source files should be handled.
diff --git a/cli/cache/module_info.rs b/cli/cache/module_info.rs
index 6bb718038..6d317b216 100644
--- a/cli/cache/module_info.rs
+++ b/cli/cache/module_info.rs
@@ -6,9 +6,9 @@ use deno_ast::MediaType;
 use deno_ast::ModuleSpecifier;
 use deno_core::error::AnyError;
 use deno_core::serde_json;
-use deno_graph::DefaultModuleAnalyzer;
 use deno_graph::ModuleInfo;
 use deno_graph::ModuleParser;
+use deno_graph::ParserModuleAnalyzer;
 use deno_runtime::deno_webstorage::rusqlite::params;
 
 use super::cache_db::CacheDB;
@@ -169,7 +169,7 @@ impl<'a> deno_graph::ModuleAnalyzer for ModuleInfoCacheModuleAnalyzer<'a> {
     }
 
     // otherwise, get the module info from the parsed source cache
-    let analyzer = DefaultModuleAnalyzer::new(self.parser);
+    let analyzer = ParserModuleAnalyzer::new(self.parser);
     let module_info = analyzer.analyze(specifier, source, media_type)?;
 
     // then attempt to cache it
diff --git a/cli/emit.rs b/cli/emit.rs
index 2c267df67..0c79b11ee 100644
--- a/cli/emit.rs
+++ b/cli/emit.rs
@@ -4,6 +4,7 @@ use crate::cache::EmitCache;
 use crate::cache::FastInsecureHasher;
 use crate::cache::ParsedSourceCache;
 
+use deno_ast::SourceMapOption;
 use deno_core::error::AnyError;
 use deno_core::ModuleCodeString;
 use deno_core::ModuleSpecifier;
@@ -15,23 +16,31 @@ use std::sync::Arc;
 pub struct Emitter {
   emit_cache: EmitCache,
   parsed_source_cache: Arc<ParsedSourceCache>,
+  transpile_options: deno_ast::TranspileOptions,
   emit_options: deno_ast::EmitOptions,
-  // cached hash of the emit options
-  emit_options_hash: u64,
+  // cached hash of the transpile and emit options
+  transpile_and_emit_options_hash: u64,
 }
 
 impl Emitter {
   pub fn new(
     emit_cache: EmitCache,
     parsed_source_cache: Arc<ParsedSourceCache>,
+    transpile_options: deno_ast::TranspileOptions,
     emit_options: deno_ast::EmitOptions,
   ) -> Self {
-    let emit_options_hash = FastInsecureHasher::hash(&emit_options);
+    let transpile_and_emit_options_hash = {
+      let mut hasher = FastInsecureHasher::default();
+      hasher.write_hashable(&transpile_options);
+      hasher.write_hashable(emit_options);
+      hasher.finish()
+    };
     Self {
       emit_cache,
       parsed_source_cache,
       emit_options,
-      emit_options_hash,
+      transpile_options,
+      transpile_and_emit_options_hash,
     }
   }
 
@@ -90,7 +99,8 @@ impl Emitter {
         source.clone(),
         media_type,
       )?;
-      let transpiled_source = parsed_source.transpile(&self.emit_options)?;
+      let transpiled_source =
+        parsed_source.transpile(&self.transpile_options, &self.emit_options)?;
       debug_assert!(transpiled_source.source_map.is_none());
       self.emit_cache.set_emit_code(
         specifier,
@@ -115,9 +125,10 @@ impl Emitter {
     let parsed_source = self
       .parsed_source_cache
       .get_or_parse_module(specifier, source_arc, media_type)?;
-    let mut options = self.emit_options.clone();
-    options.inline_source_map = false;
-    let transpiled_source = parsed_source.transpile(&options)?;
+    let mut options = self.emit_options;
+    options.source_map = SourceMapOption::None;
+    let transpiled_source =
+      parsed_source.transpile(&self.transpile_options, &options)?;
     Ok(transpiled_source.text)
   }
 
@@ -127,7 +138,7 @@ impl Emitter {
   fn get_source_hash(&self, source_text: &str) -> u64 {
     FastInsecureHasher::new()
       .write_str(source_text)
-      .write_u64(self.emit_options_hash)
+      .write_u64(self.transpile_and_emit_options_hash)
       .finish()
   }
 }
diff --git a/cli/factory.rs b/cli/factory.rs
index 18f6b6b2a..6e5db8a80 100644
--- a/cli/factory.rs
+++ b/cli/factory.rs
@@ -549,11 +549,14 @@ impl CliFactory {
       if let Some(ignored_options) = ts_config_result.maybe_ignored_options {
         warn!("{}", ignored_options);
       }
-      let emit_options =
-        crate::args::ts_config_to_emit_options(ts_config_result.ts_config);
+      let (transpile_options, emit_options) =
+        crate::args::ts_config_to_transpile_and_emit_options(
+          ts_config_result.ts_config,
+        );
       Ok(Arc::new(Emitter::new(
         self.emit_cache()?.clone(),
         self.parsed_source_cache().clone(),
+        transpile_options,
         emit_options,
       )))
     })
diff --git a/cli/graph_util.rs b/cli/graph_util.rs
index b729a1b61..6214a1628 100644
--- a/cli/graph_util.rs
+++ b/cli/graph_util.rs
@@ -76,6 +76,7 @@ pub fn graph_valid(
         check_js: options.check_js,
         follow_type_only: options.follow_type_only,
         follow_dynamic: options.is_vendoring,
+        prefer_fast_check_graph: false,
       },
     )
     .errors()
@@ -441,14 +442,13 @@ impl ModuleGraphBuilder {
         loader.as_mut_loader(),
         deno_graph::BuildOptions {
           is_dynamic: options.is_dynamic,
-          jsr_url_provider: Some(&CliJsrUrlProvider),
+          jsr_url_provider: &CliJsrUrlProvider,
           executor: Default::default(),
           imports: maybe_imports,
           resolver: Some(graph_resolver),
-          file_system: Some(&DenoGraphFsAdapter(self.fs.as_ref())),
+          file_system: &DenoGraphFsAdapter(self.fs.as_ref()),
           npm_resolver: Some(graph_npm_resolver),
-          module_analyzer: Some(&analyzer),
-          module_parser: Some(&parser),
+          module_analyzer: &analyzer,
           reporter: maybe_file_watcher_reporter,
           workspace_members: &workspace_members,
         },
@@ -799,6 +799,7 @@ pub fn has_graph_root_local_dependent_changed(
     deno_graph::WalkOptions {
       follow_dynamic: true,
       follow_type_only: true,
+      prefer_fast_check_graph: true,
       check_js: true,
     },
   );
diff --git a/cli/tools/bundle.rs b/cli/tools/bundle.rs
index 23d5aacb1..e8b9076ea 100644
--- a/cli/tools/bundle.rs
+++ b/cli/tools/bundle.rs
@@ -144,15 +144,18 @@ fn bundle_module_graph(
     }
   }
 
+  let (transpile_options, emit_options) =
+    crate::args::ts_config_to_transpile_and_emit_options(
+      ts_config_result.ts_config,
+    );
   deno_emit::bundle_graph(
     graph,
     deno_emit::BundleOptions {
       minify: false,
       bundle_type: deno_emit::BundleType::Module,
-      emit_options: crate::args::ts_config_to_emit_options(
-        ts_config_result.ts_config,
-      ),
+      emit_options,
       emit_ignore_directives: true,
+      transpile_options,
     },
   )
 }
diff --git a/cli/tools/compile.rs b/cli/tools/compile.rs
index 2825c92c7..75572cd42 100644
--- a/cli/tools/compile.rs
+++ b/cli/tools/compile.rs
@@ -73,10 +73,17 @@ pub async fn compile(
 
   let ts_config_for_emit =
     cli_options.resolve_ts_config_for_emit(deno_config::TsConfigType::Emit)?;
-  let emit_options =
-    crate::args::ts_config_to_emit_options(ts_config_for_emit.ts_config);
+  let (transpile_options, emit_options) =
+    crate::args::ts_config_to_transpile_and_emit_options(
+      ts_config_for_emit.ts_config,
+    );
   let parser = parsed_source_cache.as_capturing_parser();
-  let eszip = eszip::EszipV2::from_graph(graph, &parser, emit_options)?;
+  let eszip = eszip::EszipV2::from_graph(
+    graph,
+    &parser,
+    transpile_options,
+    emit_options,
+  )?;
 
   log::info!(
     "{} {} to {}",
diff --git a/cli/tools/doc.rs b/cli/tools/doc.rs
index 91cede879..ac568ada4 100644
--- a/cli/tools/doc.rs
+++ b/cli/tools/doc.rs
@@ -18,6 +18,7 @@ use deno_core::anyhow::bail;
 use deno_core::anyhow::Context;
 use deno_core::error::AnyError;
 use deno_doc as doc;
+use deno_graph::source::NullFileSystem;
 use deno_graph::GraphKind;
 use deno_graph::ModuleAnalyzer;
 use deno_graph::ModuleParser;
@@ -53,8 +54,16 @@ async fn generate_doc_nodes_for_builtin_types(
       vec![source_file_specifier.clone()],
       &mut loader,
       deno_graph::BuildOptions {
-        module_analyzer: Some(analyzer),
-        ..Default::default()
+        module_analyzer: analyzer,
+        file_system: &NullFileSystem,
+        is_dynamic: false,
+        imports: Vec::new(),
+        executor: Default::default(),
+        jsr_url_provider: Default::default(),
+        npm_resolver: None,
+        reporter: None,
+        resolver: None,
+        workspace_members: &[],
       },
     )
     .await;
@@ -159,6 +168,7 @@ pub async fn doc(flags: Flags, doc_flags: DocFlags) -> Result<(), AnyError> {
             kind_with_drilldown:
               deno_doc::html::DocNodeKindWithDrilldown::Other(node.kind),
             inner: std::sync::Arc::new(node),
+            drilldown_parent_kind: None,
           })
           .collect(),
         &[],
diff --git a/cli/tools/registry/graph.rs b/cli/tools/registry/graph.rs
index 0310a97c6..001f85e76 100644
--- a/cli/tools/registry/graph.rs
+++ b/cli/tools/registry/graph.rs
@@ -59,6 +59,8 @@ pub fn collect_invalid_external_imports(
   let options = WalkOptions {
     check_js: true,
     follow_dynamic: true,
+    // this being disabled will cause it to follow everything in the graph
+    prefer_fast_check_graph: false,
     follow_type_only: true,
   };
   let mut iter = graph.walk(&graph.roots, options);
diff --git a/cli/tools/registry/unfurl.rs b/cli/tools/registry/unfurl.rs
index 2224d0870..f45b6ffc3 100644
--- a/cli/tools/registry/unfurl.rs
+++ b/cli/tools/registry/unfurl.rs
@@ -4,9 +4,9 @@ use deno_ast::ParsedSource;
 use deno_ast::SourceRange;
 use deno_ast::SourceTextInfo;
 use deno_core::ModuleSpecifier;
-use deno_graph::DefaultModuleAnalyzer;
 use deno_graph::DependencyDescriptor;
 use deno_graph::DynamicTemplatePart;
+use deno_graph::ParserModuleAnalyzer;
 use deno_graph::TypeScriptReference;
 use deno_runtime::deno_node::is_builtin_node_module;
 
@@ -192,7 +192,7 @@ impl<'a> SpecifierUnfurler<'a> {
     diagnostic_reporter: &mut dyn FnMut(SpecifierUnfurlerDiagnostic),
   ) -> String {
     let mut text_changes = Vec::new();
-    let module_info = DefaultModuleAnalyzer::module_info(parsed_source);
+    let module_info = ParserModuleAnalyzer::module_info(parsed_source);
     let analyze_specifier =
       |specifier: &str,
        range: &deno_graph::PositionRange,
diff --git a/cli/tools/repl/session.rs b/cli/tools/repl/session.rs
index 48614cfe5..e5f70df15 100644
--- a/cli/tools/repl/session.rs
+++ b/cli/tools/repl/session.rs
@@ -254,9 +254,11 @@ impl ReplSession {
       })?;
     let ts_config_for_emit = cli_options
       .resolve_ts_config_for_emit(deno_config::TsConfigType::Emit)?;
-    let emit_options =
-      crate::args::ts_config_to_emit_options(ts_config_for_emit.ts_config);
-    let experimental_decorators = emit_options.use_ts_decorators;
+    let (transpile_options, _) =
+      crate::args::ts_config_to_transpile_and_emit_options(
+        ts_config_for_emit.ts_config,
+      );
+    let experimental_decorators = transpile_options.use_ts_decorators;
     let mut repl_session = ReplSession {
       npm_resolver,
       resolver,
@@ -619,23 +621,27 @@ impl ReplSession {
     self.analyze_and_handle_jsx(&parsed_source);
 
     let transpiled_src = parsed_source
-      .transpile(&deno_ast::EmitOptions {
-        use_ts_decorators: self.experimental_decorators,
-        use_decorators_proposal: !self.experimental_decorators,
-        emit_metadata: false,
-        source_map: false,
-        inline_source_map: false,
-        inline_sources: false,
-        imports_not_used_as_values: ImportsNotUsedAsValues::Preserve,
-        transform_jsx: true,
-        precompile_jsx: false,
-        jsx_automatic: self.jsx.import_source.is_some(),
-        jsx_development: false,
-        jsx_factory: self.jsx.factory.clone(),
-        jsx_fragment_factory: self.jsx.frag_factory.clone(),
-        jsx_import_source: self.jsx.import_source.clone(),
-        var_decl_imports: true,
-      })?
+      .transpile(
+        &deno_ast::TranspileOptions {
+          use_ts_decorators: self.experimental_decorators,
+          use_decorators_proposal: !self.experimental_decorators,
+          emit_metadata: false,
+          imports_not_used_as_values: ImportsNotUsedAsValues::Preserve,
+          transform_jsx: true,
+          precompile_jsx: false,
+          jsx_automatic: self.jsx.import_source.is_some(),
+          jsx_development: false,
+          jsx_factory: self.jsx.factory.clone(),
+          jsx_fragment_factory: self.jsx.frag_factory.clone(),
+          jsx_import_source: self.jsx.import_source.clone(),
+          var_decl_imports: true,
+        },
+        &deno_ast::EmitOptions {
+          source_map: deno_ast::SourceMapOption::None,
+          inline_sources: false,
+          keep_comments: false,
+        },
+      )?
       .text;
 
     let value = self
diff --git a/cli/tools/vendor/test.rs b/cli/tools/vendor/test.rs
index d54bf5dc5..09e911277 100644
--- a/cli/tools/vendor/test.rs
+++ b/cli/tools/vendor/test.rs
@@ -236,13 +236,12 @@ impl VendorTestBuilder {
         let resolver = resolver.clone();
         move |entry_points| {
           async move {
-            let analyzer = DefaultModuleAnalyzer::default();
             Ok(
               build_test_graph(
                 entry_points,
                 loader,
                 resolver.as_graph_resolver(),
-                &analyzer,
+                &DefaultModuleAnalyzer,
               )
               .await,
             )
@@ -310,7 +309,7 @@ async fn build_test_graph(
       &mut loader,
       deno_graph::BuildOptions {
         resolver: Some(resolver),
-        module_analyzer: Some(analyzer),
+        module_analyzer: analyzer,
         ..Default::default()
       },
     )
diff --git a/ext/websocket/autobahn/fuzzingclient.js b/ext/websocket/autobahn/fuzzingclient.js
index 6597fb689..9edc7293f 100644
--- a/ext/websocket/autobahn/fuzzingclient.js
+++ b/ext/websocket/autobahn/fuzzingclient.js
@@ -4,6 +4,7 @@
 
 import { $ } from "https://deno.land/x/dax@0.31.0/mod.ts";
 
+$.setPrintCommand(true);
 const pwd = new URL(".", import.meta.url).pathname;
 
 const AUTOBAHN_TESTSUITE_DOCKER =
diff --git a/runtime/shared.rs b/runtime/shared.rs
index f9af2c7d4..c5ea2fedd 100644
--- a/runtime/shared.rs
+++ b/runtime/shared.rs
@@ -3,6 +3,7 @@
 
 use deno_ast::MediaType;
 use deno_ast::ParseParams;
+use deno_ast::SourceMapOption;
 use deno_ast::SourceTextInfo;
 use deno_core::error::AnyError;
 use deno_core::extension;
@@ -94,12 +95,20 @@ pub fn maybe_transpile_source(
     scope_analysis: false,
     maybe_syntax: None,
   })?;
-  let transpiled_source = parsed.transpile(&deno_ast::EmitOptions {
-    imports_not_used_as_values: deno_ast::ImportsNotUsedAsValues::Remove,
-    inline_source_map: false,
-    source_map: cfg!(debug_assertions),
-    ..Default::default()
-  })?;
+  let transpiled_source = parsed.transpile(
+    &deno_ast::TranspileOptions {
+      imports_not_used_as_values: deno_ast::ImportsNotUsedAsValues::Remove,
+      ..Default::default()
+    },
+    &deno_ast::EmitOptions {
+      source_map: if cfg!(debug_assertions) {
+        SourceMapOption::Separate
+      } else {
+        SourceMapOption::None
+      },
+      ..Default::default()
+    },
+  )?;
 
   let maybe_source_map: Option<SourceMapData> = transpiled_source
     .source_map
diff --git a/tests/integration/doc_tests.rs b/tests/integration/doc_tests.rs
index de28edd10..f541f5a18 100644
--- a/tests/integration/doc_tests.rs
+++ b/tests/integration/doc_tests.rs
@@ -149,10 +149,7 @@ fn deno_doc_html() {
   assert!(temp_dir.path().join("search_index.js").exists());
   assert!(temp_dir.path().join("styles.css").exists());
   assert!(temp_dir.path().join("~/MyInterface.html").exists());
-  assert!(temp_dir
-    .path()
-    .join("~/MyInterface.prototype.prop.html")
-    .exists());
+  assert!(temp_dir.path().join("~/MyInterface.prop.html").exists());
   assert!(temp_dir.path().join("~/MyClass.html").exists());
   assert!(temp_dir.path().join("~/MyClass.prototype.html").exists());
   assert!(temp_dir
diff --git a/tests/testdata/coverage/complex_expected.lcov b/tests/testdata/coverage/complex_expected.lcov
index 94b86465a..5f0983aa8 100644
--- a/tests/testdata/coverage/complex_expected.lcov
+++ b/tests/testdata/coverage/complex_expected.lcov
@@ -11,11 +11,6 @@ FNF:4
 FNH:2
 BRF:0
 BRH:0
-DA:1,1
-DA:13,1
-DA:14,1
-DA:15,1
-DA:16,1
 DA:17,2
 DA:18,2
 DA:19,2
@@ -26,9 +21,6 @@ DA:24,2
 DA:25,2
 DA:26,2
 DA:27,2
-DA:29,1
-DA:30,1
-DA:31,1
 DA:32,1
 DA:33,1
 DA:34,1
@@ -38,8 +30,6 @@ DA:38,2
 DA:39,2
 DA:40,2
 DA:42,2
-DA:44,1
-DA:45,1
 DA:46,0
 DA:47,0
 DA:48,0
@@ -49,19 +39,13 @@ DA:52,0
 DA:53,0
 DA:54,0
 DA:56,0
-DA:58,1
-DA:59,1
 DA:60,1
-DA:62,1
-DA:63,1
 DA:64,0
 DA:65,0
 DA:66,0
 DA:68,0
-DA:70,1
 DA:71,0
-DA:73,1
 DA:74,1
-LH:37
-LF:51
+LH:21
+LF:35
 end_of_record
diff --git a/tests/testdata/coverage/complex_expected.out b/tests/testdata/coverage/complex_expected.out
index 3d5f6a0ab..bed3d9306 100644
--- a/tests/testdata/coverage/complex_expected.out
+++ b/tests/testdata/coverage/complex_expected.out
@@ -1,4 +1,4 @@
-cover [WILDCARD]/coverage/complex.ts ... 72.549% (37/51)
+cover [WILDCARD]/coverage/complex.ts ... 60.000% (21/35)
   46 | export function unused(
   47 |   foo: string,
   48 |   bar: string,